DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_FUNHE (L-lactate dehydrogenase B chain OS=Fundulus heteroclitus GN=ldhb PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 6.199e-34
Identity = 78/173 (45.09%), Postives = 103/173 (59.54%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            K I   A  S      K++V+G G VGMA A +IL +D  +ELALVD   D+L+GEM+DLQH   FL  +K++A  DYAVTA S L +VTAG RQ  GE            FK IIP ++KYSP+C +L+V NP+D+L  V   LSG P + V GS  NL+ +    +   +L
Sbjct:    7 KLITPLASSSAEPPRNKVTVVGVGQVGMACAVSILLRDLCDELALVDVMEDRLKGEMMDLQHGLLFLKTSKVVADKDYAVTANSRLVVVTAGVRQQEGESRLNLVQRNVNVFKCIIPQIIKYSPNCTILVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRYMMAERL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_AMBME (L-lactate dehydrogenase A chain OS=Ambystoma mexicanum GN=LDHA PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.199e-34
Identity = 80/157 (50.96%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++  DY+VTA S L IVTAGARQ  GE            FK IIP +VKYSPD  LL+V NP+D+L  VA  +SG P + V GS  NL+ +    +   KL
Sbjct:   23 KITVVGVGAVGMACAMSILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDATLLVVSNPVDVLTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_MONDO (L-lactate dehydrogenase B chain OS=Monodelphis domestica GN=LDHB PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 8.096e-34
Identity = 80/179 (44.69%), Postives = 105/179 (58.66%), Query Frame = 3
Query:   69 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            L +    P+      +P   + KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + F    KI+A  DY+VTAGS + +VTAG RQ  GE            FK IIP +VKYSPDC +++V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:    4 LKEKLIAPVAEEEAAAP---NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFFQTPKIVADKDYSVTAGSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMSEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_BOVIN (L-lactate dehydrogenase B chain OS=Bos taurus GN=LDHB PE=2 SV=4)

HSP 1 Score: 145.206 bits (365), Expect = 8.096e-34
Identity = 78/159 (49.06%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            + KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DY+VTA S + +VTAG RQ  GE            FK IIP +VKYSPDCI+++V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:   21 NNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_PONAB (L-lactate dehydrogenase A chain OS=Pongo abelii GN=LDHA PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 8.096e-34
Identity = 81/157 (51.59%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++  DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LLIV NP+DIL  VA  +SG P N V GS  NL+ +    +   +L
Sbjct:   22 KITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_BOVIN (L-lactate dehydrogenase A chain OS=Bos taurus GN=LDHA PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 8.096e-34
Identity = 79/162 (48.77%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            KI+++G G VGMA A +IL +D  +E+ALVD   DKL+GEM+DLQH + FL   KI++  DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LL+V NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   22 KITIVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_BOSMU (L-lactate dehydrogenase A chain OS=Bos mutus grunniens GN=LDHA PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 8.096e-34
Identity = 79/162 (48.77%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYTL 620
            KI+++G G VGMA A +IL +D  +E+ALVD   DKL+GEM+DLQH + FL   KI++  DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LL+V NP+DIL  VA  +SG P N V GS  NL+ +    +   +L  + L
Sbjct:   22 KITIVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 183          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_FUNPA (L-lactate dehydrogenase B chain (Fragment) OS=Fundulus parvipinnis GN=ldhb PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.804e-33
Identity = 77/173 (44.51%), Postives = 102/173 (58.96%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            K I   A  S      K++V+G G VGMA   +IL +D  +ELALVD   D+L+GEM+DLQH   FL  +K++A  DYAVTA S L +VTAG RQ  GE            FK IIP ++KYSP+C +L+V NP+D+L  V   LSG P + V GS  NL+ +    +   +L
Sbjct:    2 KLITPLASSSAEPPRNKVTVVGVGQVGMACTVSILLRDLCDELALVDVMEDRLKGEMMDLQHGLLFLKTSKVVADKDYAVTANSRLVVVTAGVRQQEGESRLNLVQRNVNVFKCIIPQIIKYSPNCTILVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRYMMAERL 174          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHA_XENLA (L-lactate dehydrogenase A chain OS=Xenopus laevis GN=ldha PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.804e-33
Identity = 76/161 (47.20%), Postives = 98/161 (60.87%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLN 569
            K I       P K   KI+++G G VGMA A ++L ++  +ELALVD   DKL+GEM+DLQH + FL    I+A  DY+VTA S + +VT G RQ  GE            FK IIP +VKYSPDCI+L+V NP+DIL  V   LSG P + + GS  NL+
Sbjct:    7 KLITCVCQDKPAKPTNKITIVGVGQVGMACAVSVLLKELADELALVDILEDKLKGEMMDLQHGSLFLKTPTIVADKDYSVTANSRIVVVTGGVRQQEGESRLNLVQRNVNIFKFIIPQIVKYSPDCIILVVSNPVDILTYVTWKLSGLPQHRIIGSGTNLD 167          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_RAT (L-lactate dehydrogenase B chain OS=Rattus norvegicus GN=Ldhb PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.076e-33
Identity = 77/159 (48.43%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            + KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DY+VTA S + +VTAG RQ  GE            FK IIP +VKYSPDC +++V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:   21 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKL 179          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDHB_FUNHE6.199e-3445.09L-lactate dehydrogenase B chain OS=Fundulus hetero... [more]
LDHA_AMBME6.199e-3450.96L-lactate dehydrogenase A chain OS=Ambystoma mexic... [more]
LDHB_MONDO8.096e-3444.69L-lactate dehydrogenase B chain OS=Monodelphis dom... [more]
LDHB_BOVIN8.096e-3449.06L-lactate dehydrogenase B chain OS=Bos taurus GN=L... [more]
LDHA_PONAB8.096e-3451.59L-lactate dehydrogenase A chain OS=Pongo abelii GN... [more]
LDHA_BOVIN8.096e-3448.77L-lactate dehydrogenase A chain OS=Bos taurus GN=L... [more]
LDHA_BOSMU8.096e-3448.77L-lactate dehydrogenase A chain OS=Bos mutus grunn... [more]
LDHB_FUNPA1.804e-3344.51L-lactate dehydrogenase B chain (Fragment) OS=Fund... [more]
LDHA_XENLA1.804e-3347.20L-lactate dehydrogenase A chain OS=Xenopus laevis ... [more]
LDHB_RAT3.076e-3348.43L-lactate dehydrogenase B chain OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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