DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_MOUSE (L-lactate dehydrogenase B chain OS=Mus musculus GN=Ldhb PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.076e-33
Identity = 77/159 (48.43%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            + KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DY+VTA S + +VTAG RQ  GE            FK IIP +VKYSPDC +++V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:   21 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_ALLMI (L-lactate dehydrogenase B chain OS=Alligator mississippiensis GN=LDHB PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 4.018e-33
Identity = 77/159 (48.43%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            ++K++V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP ++KYSPDC +L+V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:   20 NSKVTVVGVGQVGMACAISILGKRLGDELALVDVWEDKLKGEMMDLQHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIIKYSPDCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMSEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_DROME (L-lactate dehydrogenase OS=Drosophila melanogaster GN=ImpL3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.248e-33
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  117 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            P+  H K++++G G VGMA A +IL Q+  +E+ L+D  ADKL+GE++DLQH + FL   +I AS D+A +A S LCIVTAG RQ  GE             K IIP LV+YSPD ILL+V NP+DI+  VA  LSG P N V GS  NL+ S    +   +L
Sbjct:   17 PSSGH-KVTIVGIGQVGMASAFSILAQNVSKEVCLIDVCADKLQGELMDLQHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLVEYSPDTILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_ANAPL (L-lactate dehydrogenase B chain OS=Anas platyrhynchos GN=LDHB PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 6.854e-33
Identity = 77/158 (48.73%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            +KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP +VKYSP+C +L+V NP+DIL  V   LSG P + V GS  NL+ +    +   +L
Sbjct:   21 SKITVVGVGQVGMACAVSILGKGLCDELALVDVLEDKLKGEMMDLQHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVGVFKGIIPQIVKYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_SQUAC (L-lactate dehydrogenase B chain OS=Squalus acanthias GN=ldhb PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.169e-32
Identity = 73/157 (46.50%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            K++V+G G VGMA A +IL ++  +E+ALVD   DKL+GEM+DL H + FL   KI+A+ DY +TA S + +VTAGARQ  GE            FK IIP +VKYSP+C +++V NP+DIL  V   +SG P N V GS  NL+ +    +   KL
Sbjct:   23 KVTVVGVGQVGMACAVSILLRELTDEIALVDVLEDKLKGEMMDLLHGSLFLKTPKIMANKDYGITANSRVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPQIVKYSPNCTIIVVSNPVDILTYVTWKISGFPKNRVIGSGCNLDSARFRYLMAEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_CHICK (L-lactate dehydrogenase B chain OS=Gallus gallus GN=LDHB PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.994e-32
Identity = 77/157 (49.04%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP +VKYSP+C +L+V NP+DIL  V   LSG P + V GS  NL+ +    +   +L
Sbjct:   22 KITVVGVGQVGMACAISILGKGLCDELALVDVLEDKLKGEMMDLQHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHC_XENLA (L-lactate dehydrogenase C chain OS=Xenopus laevis GN=ldhc PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 3.401e-32
Identity = 74/171 (43.27%), Postives = 101/171 (59.06%), Query Frame = 3
Query:   93 INHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            I +       K   KI+++G G VGMA A ++L ++  +ELALVD   DKL+GE++DLQH + FL    I+A  DY+VTA S + +VT G RQ  GE            FK IIP +VKYSPDCI+++V NP+DIL  V   LSG P + + GS  NL+ +    +   KL
Sbjct:    9 ITNVCQDKAAKPTNKITIVGVGQVGMACAVSVLLKELADELALVDILEDKLKGEVMDLQHGSLFLKTPTIVADKDYSVTANSRIVVVTGGVRQQEGESALNLVQRNVNVFKFIIPQVVKYSPDCIIIVVSNPVDILTYVTWKLSGLPQHRIIGSGTNLDSARFRHLISEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHC_PIG (L-lactate dehydrogenase C chain OS=Sus scrofa GN=LDHC PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 5.802e-32
Identity = 76/158 (48.10%), Postives = 101/158 (63.92%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            +KI+++GTG VGMA A  IL +D  +ELALVD   DKL+GE +DLQH + F   +KI++  DY+V+A S + IVTAGARQ  GE             K+IIP +V++SPDC +LIV NP+DIL  VA  LSG P+  V GS  NL+ +    +   KL
Sbjct:   21 SKITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKIVSGKDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVQHSPDCKMLIVSNPVDILTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHC_VULVU (L-lactate dehydrogenase C chain OS=Vulpes vulpes GN=LDHC PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 7.578e-32
Identity = 77/157 (49.04%), Postives = 99/157 (63.06%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            KI+++GTG VGMA A  IL +D  +ELALVD   DKL+GEM+DLQH + F   +KI +  DY+V+A S L IVTAGARQ  GE             K+IIP +V++SPDC +LIV NP+DIL  V   LSG P+  V GS  NL+ +    +   KL
Sbjct:   22 KITIVGTGAVGMACAICILLKDLADELALVDVAVDKLKGEMMDLQHGSLFFNTSKITSGKDYSVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPAVVQHSPDCKMLIVSNPVDILTYVVWKLSGLPATRVFGSGCNLDSARFRYLIGEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH6B_HUMAN (L-lactate dehydrogenase A-like 6B OS=Homo sapiens GN=LDHAL6B PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 7.578e-32
Identity = 76/163 (46.63%), Postives = 100/163 (61.35%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYT 617
            H+K+S+IGTG+VGMA A +IL +   +ELALVD   DKL+GE +DLQH + F     I+ S DY VTA S+L I+TAGARQ  GE            FK +I  +V+YSP C L+IV NP+DIL  VA  LS  P N + GS  NL+ +    +   KL  ++
Sbjct:   69 HSKVSIIGTGSVGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPVDILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHS 231          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDHB_MOUSE3.076e-3348.43L-lactate dehydrogenase B chain OS=Mus musculus GN... [more]
LDHB_ALLMI4.018e-3348.43L-lactate dehydrogenase B chain OS=Alligator missi... [more]
LDH_DROME5.248e-3347.85L-lactate dehydrogenase OS=Drosophila melanogaster... [more]
LDHB_ANAPL6.854e-3348.73L-lactate dehydrogenase B chain OS=Anas platyrhync... [more]
LDHB_SQUAC1.169e-3246.50L-lactate dehydrogenase B chain OS=Squalus acanthi... [more]
LDHB_CHICK1.994e-3249.04L-lactate dehydrogenase B chain OS=Gallus gallus G... [more]
LDHC_XENLA3.401e-3243.27L-lactate dehydrogenase C chain OS=Xenopus laevis ... [more]
LDHC_PIG5.802e-3248.10L-lactate dehydrogenase C chain OS=Sus scrofa GN=L... [more]
LDHC_VULVU7.578e-3249.04L-lactate dehydrogenase C chain OS=Vulpes vulpes G... [more]
LDH6B_HUMAN7.578e-3246.63L-lactate dehydrogenase A-like 6B OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
back to top