DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_COLLI (L-lactate dehydrogenase B chain OS=Columba livia GN=LDHB PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 9.897e-32
Identity = 75/159 (47.17%), Postives = 98/159 (61.64%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            + KIS++G G VGMA A +IL +   +ELALVD   D+L+GEM+DLQH + F    KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP +VKYSP+C +L+V NP+DIL  V   LSG P + V GS  NL+ +    +   +L
Sbjct:   20 NNKISIVGVGQVGMASAISILGKGLCDELALVDVMEDRLKGEMMDLQHGSLFPHTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMSERL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_XENLA (L-lactate dehydrogenase B chain OS=Xenopus laevis GN=ldhb PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.293e-31
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 3
Query:   87 KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            K I +       K   KI+++G G VGMA A ++L ++  +ELALVD   DKL+GE++DLQH + FL    I+A  DY+VTA S + +VT G  Q  GE            FK IIP +VKYSPDCI+++V NP+DIL  V   LSG P + + GS  NL+ +    +   KL
Sbjct:    7 KLITNVCQDKAAKPTNKITIVGVGQVGMACAVSVLLKELADELALVDILEDKLKGEVMDLQHGSLFLKTPTIVADKDYSVTANSRIVVVTGGVPQQEGESRLNLVQRNVNVFKFIIPQVVKYSPDCIIIVVSNPVDILTYVTWKLSGLPQHRIIGSGTNLDSARFRHLISEKL 179          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_TRASC (L-lactate dehydrogenase B chain OS=Trachemys scripta GN=LDHB PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.293e-31
Identity = 77/162 (47.53%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  120 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            T  + KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH +  L   KI+A  DYAVTA S + +VTAG RQ  GE            FK IIP ++KYSP+C +L+V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:   17 TTPNNKITVVGVGQVGMACAISILGKGLCDELALVDVWEDKLKGEMMDLQHGSLVLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIMKYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRHLMAEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHC_HUMAN (L-lactate dehydrogenase C chain OS=Homo sapiens GN=LDHC PE=2 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 1.688e-31
Identity = 74/157 (47.13%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            KI+++GTG VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + F   +KI +  DY+V+A S + IVTAGARQ  GE             K+IIP +V YSPDC +L+V NP+DIL  +   +SG P   V GS  NL+ +    +   KL
Sbjct:   22 KITIVGTGAVGMACAISILLKDLADELALVDVALDKLKGEMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH6B_MACFA (L-lactate dehydrogenase A-like 6B OS=Macaca fascicularis GN=LDHAL6B PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.205e-31
Identity = 75/163 (46.01%), Postives = 102/163 (62.58%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYT 617
            H+K+S+IGTG+VGMA A +IL +  ++ELALVD    KL+GE +DLQH ++F     I+ S DY VTA S+L I+TAGARQ  GE            FK +I  +V++SP C L+IV NP+DIL+ VA  LS  P N V GS  NL+ +    +   KL  ++
Sbjct:   69 HSKVSIIGTGSVGMACAISILLKGLIDELALVDLDEGKLKGETMDLQHGSSFTKMPNIVCSKDYFVTANSNLVIITAGARQEKGETRLNLVQRNVALFKLMISNIVQHSPHCKLIIVSNPVDILSYVAWKLSAFPKNRVIGSGCNLDTARFRFLIGQKLGIHS 231          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH6A_HUMAN (L-lactate dehydrogenase A-like 6A OS=Homo sapiens GN=LDHAL6A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.205e-31
Identity = 74/147 (50.34%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  129 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLN 569
            H KIS++GTG+VG+A A +IL +   +EL LVD    KL+GE +DLQH + F+    I++S DY VTA S+L I+TAGARQ  GE            FK +IP + +YSP C LLIV NP+DIL  VA  LSG P N V GS  NL+
Sbjct:   20 HNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKGETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLMIPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLD 166          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHB_PELSJ (L-lactate dehydrogenase B chain OS=Pelodiscus sinensis japonicus GN=LDHB PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 4.912e-31
Identity = 76/162 (46.91%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  120 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            T  + KI+V+G G VGMA A +IL +   +ELALVD   DKL+GEM+DLQH + FL   KI+A  D  VTA S + +VTAG RQ  GE            FK IIP ++KYSP+C +L+V NP+DIL  V   LSG P + V GS  NL+ +    +   KL
Sbjct:   17 TTPNNKITVVGVGQVGMACAISILGKGLCDELALVDVLEDKLKGEMMDLQHGSLFLQTHKIVADKDLRVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIMKYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRHLMAEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH6B_BOVIN (L-lactate dehydrogenase A-like 6B OS=Bos taurus GN=LDHAL6B PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.866e-30
Identity = 72/164 (43.90%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  126 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKLNSYT 617
            R++KIS++GTG+VGMA A +IL +   +ELALVD    +L+GE +DLQH + F+    I++S DY VTA S+L I+TAGARQ  GE            FK ++  +V+YSP C L++V NP+DIL  VA  LS  P N V GS  NL+ +    +   +L+ ++
Sbjct:   68 RNSKISIVGTGSVGMACAVSILLKGLSDELALVDVDEGRLKGETMDLQHGSLFVKMPNIVSSRDYVVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVVSNPVDILTYVAWKLSAFPQNRVIGSGCNLDTARFRFLIGQRLSIHS 231          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHC_MOUSE (L-lactate dehydrogenase C chain OS=Mus musculus GN=Ldhc PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.184e-30
Identity = 75/165 (45.45%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  111 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            P       KI+V+G GNVGMA A +IL +   +ELALVDA  +KLRGE LDL H + FL   KI+   DY V+A S L I+TAGAR ++GE             KAI+P +V+ SPDC ++IV NP+DIL  V   +SG P   V GS  NL+ +    +   KL
Sbjct:   14 PEDKLSRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRGEALDLLHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAIVPGIVQNSPDCKIIIVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKL 178          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDHC_RAT (L-lactate dehydrogenase C chain OS=Rattus norvegicus GN=Ldhc PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 4.158e-30
Identity = 73/165 (44.24%), Postives = 100/165 (60.61%), Query Frame = 3
Query:  111 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSMLNLIQDYKL 605
            P   +   KI+V+G GNVGMA A +IL +   +ELALVDA  +KL+GE LDL H + FL   KI+   DY+V+A S L I+TAGAR ++GE             KAI+P +++ SPDC ++IV NP+DIL  V   +SG P + V GS  NL+ +    +   KL
Sbjct:   14 PDEKQSRCKITVVGVGNVGMACAISILLKGLADELALVDADENKLKGEALDLLHGSLFLSTPKIVFGKDYSVSANSKLVIITAGARMVSGESRLALLQRNVTSMKAIVPGVIQNSPDCKIMIVTNPVDILTYVVWKISGLPVSSVIGSGCNLDSARFRYLIGEKL 178          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDHB_COLLI9.897e-3247.17L-lactate dehydrogenase B chain OS=Columba livia G... [more]
LDHB_XENLA1.293e-3142.77L-lactate dehydrogenase B chain OS=Xenopus laevis ... [more]
LDHB_TRASC1.293e-3147.53L-lactate dehydrogenase B chain OS=Trachemys scrip... [more]
LDHC_HUMAN1.688e-3147.13L-lactate dehydrogenase C chain OS=Homo sapiens GN... [more]
LDH6B_MACFA2.205e-3146.01L-lactate dehydrogenase A-like 6B OS=Macaca fascic... [more]
LDH6A_HUMAN2.205e-3150.34L-lactate dehydrogenase A-like 6A OS=Homo sapiens ... [more]
LDHB_PELSJ4.912e-3146.91L-lactate dehydrogenase B chain OS=Pelodiscus sine... [more]
LDH6B_BOVIN1.866e-3043.90L-lactate dehydrogenase A-like 6B OS=Bos taurus GN... [more]
LDHC_MOUSE3.184e-3045.45L-lactate dehydrogenase C chain OS=Mus musculus GN... [more]
LDHC_RAT4.158e-3044.24L-lactate dehydrogenase C chain OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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