DY263065

Overview
NameDY263065
Unique NameDY263065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1304
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH1_CLOAB (L-lactate dehydrogenase 1 OS=Clostridium acetobutylicum GN=ldh1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.757e-26
Identity = 65/151 (43.05%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  123 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPS 575
            K++TKISVIG G VG +    ++      E+ +VD   DK  GE +DL H AAF+ +  ++ S DY  T GSD+ I+TAGA Q  GE            FK+I+P +VKY+P+ ILL+V NP+DIL  +   LSG P + V GS   L+ S
Sbjct:    2 KKNTKISVIGAGFVGSSTVFALMNGGLASEIVIVDVNKDKAEGEAMDLSHGAAFV-KPVVVKSGDYKDTEGSDIVIITAGAAQKPGETRLELINKNYNIFKSIVPEVVKYNPNAILLVVSNPVDILTYITYKLSGFPKSRVIGSGTVLDTS 151          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOBL (L-lactate dehydrogenase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=ldh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.361e-25
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T GSD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKSKTEGEAMDLSHGADFVKPVNILSG-DYKDTEGSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPEVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOBJ (L-lactate dehydrogenase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=ldh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.361e-25
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T GSD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKSKTEGEAMDLSHGADFVKPVNILSG-DYKDTEGSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPEVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOBH (L-lactate dehydrogenase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=ldh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.361e-25
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T GSD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKSKTEGEAMDLSHGADFVKPVNILSG-DYKDTEGSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPQVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOB1 (L-lactate dehydrogenase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=ldh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.361e-25
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T GSD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKSKTEGEAMDLSHGADFVKPVNILSG-DYKDTEGSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPQVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOBK (L-lactate dehydrogenase OS=Clostridium botulinum (strain Okra / Type B1) GN=ldh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.027e-25
Identity = 66/150 (44.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T GSD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKAKTEGEAMDLSHGADFVKPVNILSG-DYKDTEGSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPEVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOBM (L-lactate dehydrogenase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=ldh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.172e-24
Identity = 65/150 (43.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T  SD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKSKTEGEAMDLSHGADFVKPVNILSG-DYKDTESSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPEVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOB6 (L-lactate dehydrogenase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=ldh PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.999e-24
Identity = 65/150 (43.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  132 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPSML 581
            TKISVIG G+VG   A  ++      E+ LVD    K  GE +DL H A F+    IL+  DY  T  SD+ ++TAGA Q  GE            FK+IIP +VKY+ D ILL+V NP+D+L+ V   LSG P   V GS   L+ S L
Sbjct:    8 TKISVIGAGSVGATTAYALMLSGVATEIVLVDVNKAKTEGEAMDLSHGADFVQPVNILSG-DYKDTESSDIVVITAGAAQKVGETRLQLINKNINIFKSIIPEVVKYNKDAILLVVSNPVDVLSYVTYKLSGFPKERVIGSGTVLDTSRL 156          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOTH (L-lactate dehydrogenase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ldh PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.692e-23
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 3
Query:  135 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGS 554
            K++V+G G VG   A T++    + E+ L+D  A K  GE++DL H   F+   +I    DY   AGSD+ I+TAGA Q  GE            FK II  +VKY+ DCILL+V NP+DIL  V   LSG P N V GS
Sbjct:    9 KVTVVGAGFVGSTTAYTLMLSGLISEIVLIDINAKKADGEVMDLNHGMPFVRPVEIYRG-DYKDCAGSDIVIITAGANQKEGETRIDLVKRNTEVFKNIINEIVKYNNDCILLVVTNPVDILTYVTYKLSGFPKNKVIGS 147          
BLAST of DY263065 vs. ExPASy Swiss-Prot
Match: LDH_CLOTE (L-lactate dehydrogenase OS=Clostridium tetani GN=ldh PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.210e-23
Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 3
Query:  123 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVPNPIDILN*VARNLSGHPSN*VTGSHNNLNPS 575
            K+  KIS+IG+G VG   A  ++ +    E+ +VD   +K +GE +DL H  +F+    I+A  DY  T  SD+ I+TAGA    GE            FK I+P +VKYSP  ILL+V NP+DIL  V   LSG P   V GS   L+ S
Sbjct:    3 KKGIKISIIGSGFVGSTTAYALMMEGLASEIVIVDINKEKAKGEAMDLSHGVSFVKPVDIIAG-DYEDTKDSDIVIITAGAGPKPGETRLDLINKNYEIFKGIVPEVVKYSPKSILLVVSNPVDILTYVTYKLSGFPQERVIGSGTVLDTS 152          
The following BLAST results are available for this feature:
BLAST of DY263065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
LDH1_CLOAB4.757e-2643.05L-lactate dehydrogenase 1 OS=Clostridium acetobuty... [more]
LDH_CLOBL2.361e-2544.00L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOBJ2.361e-2544.00L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOBH2.361e-2544.00L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOB12.361e-2544.00L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOBK4.027e-2544.00L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOBM1.172e-2443.33L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOB61.999e-2443.33L-lactate dehydrogenase OS=Clostridium botulinum (... [more]
LDH_CLOTH1.692e-2343.57L-lactate dehydrogenase OS=Clostridium thermocellu... [more]
LDH_CLOTE2.210e-2341.06L-lactate dehydrogenase OS=Clostridium tetani GN=l... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263065 ID=DY263065; Name=DY263065; organism=Citrus clementina; type=EST; length=1304bp
TCAAAATCAAATCAATAATCATGCACAAAACTCCTTCAGGATCCTCACTA
GGCCCCGGCGGCCTTGACTTGACTCAAACCTTCTTCAAGCCCATTAACCA
TGCGGCCCCACCTTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATTG
GCACTGGCAATGTCGGCATGGCCATTGCCCAAACCATACTCACCCAGGAC
TTCGTCGAAGAGCTCGCTCTCGTCGACGCCAAGGCCGACAAGCTACGTGG
CGAGATGCTCGATCTCCAACACGCTGCCGCTTTCCTCCCACGCACCAAAA
TCCTCGCCTCTGTTGATTACGCTGTCACAGCGGGATCCGATCTTTGTATC
GTCACCGCTGGCGCCAGGCAGATTGCTGGCGAGTCTAGGCTGAATCTCTT
GCAGAGGAATTTGTCCCTGTTTAAGGCTATTATTCCTCCGCTTGTCAAGT
ACTCACCTGACTGTATTTTGCTGATCGTACCTAACCCAATTGACATTTTG
AATTAAGTAGCGAGGAATCTATCTGGGCATCCTTCAAATTGAGTCACTGG
ATCCCACAATAATCTAAATCCATCCATGTTGAATTTAATCCAAGACTATA
AACTCAACTCATACACCTTAGAAATACAATAAATCATCACCACATACAAC
CTAAGAGCACAATAATGCTATTCCGGCCCACAAAAAAGAGAAGATAAAAT
CAGATAATATAACCATCAGTAGAAAAATAAAAATAAATGATGAACCAAAA
AATCAACCTGAATCTATACTATAGCATCACATTTTGAACAACACCTTGAG
GAAAGAACCTTGATGACAACCGCCAAACCGTCCAACACATCCCACTAATA
CTCTAAATCAAAAGTAAAGCCTACTGGCTTACAGTTTCCAGATTAACTCT
ATCAAAATTCAAAATATAAATTTAAAAATCTTATAAAATATTAACCGATT
CTAAAACCCAACGGGTTAAAAATCACAGATATGTAAGAAAAACCCAAAAA
TGTCAAAAATACTGACTTTATGCGGATAGATTGACAGTTTTGAACAAGAG
CCATAACCGACTAGAAATACATATACATTAAATTAATACATATTTAAATA
AGATTAATGACTTCTCTACTAAATTTTAGTAAAAAAATAACAGTTGATCC
CAATAATATAAAATAAATAAGTCAAAACTTCTAAAAATAATAAATAAGAA
TCATCCCATCCTTTGGAGAAATCGAACTAGTTTTTAATATCATAATCCGA
TAACATTATTCTAAAAAAAATAACATTCACACAGAGAATACCTATAATTA
AAAA
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