DY263087

Overview
NameDY263087
Unique NameDY263087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1357
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263087 vs. ExPASy Swiss-Prot
Match: ATPG_PROM0 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9301) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.796e-11
Identity = 58/214 (27.10%), Postives = 107/214 (50.00%), Query Frame = 1
Query:  238 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLG-----------DTPTV---DAKKNVIVTISSDKGLCGGINSTAVKISKSLHRLNSGPDKENKYVILGEKA--------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATV--LSPELVEREAESGGKLGELDS 807
            +R+R+ SVKN +KIT+AM++VAA+K+R  Q +   SR        +L            D+P +   + K   +V I++D+GLCGG N+  +K  +  +        +   +++G+KA           +++ + K++E + T      +      +LA+ + +N   D + IIY+KF ++VS  P + T+  L P+ +  E +   +L   DS
Sbjct:    7 IRDRIVSVKNTRKITEAMRLVAAAKVRRAQDQVLKSRPFADKLARVLENIQSRVQFEAVDSPLLSKREVKSISLVCITADRGLCGGYNTNIIKKVEIRYAELVKQGYQPNLILVGKKAIGYFQNRKDRYVIKSTFKELEQVPTVKDSEGVTN---EILAEFLSEN--SDRVEIIYTKFITLVSCAPVVQTLLPLDPQGIAEENDEIFRLTTKDS 215          
BLAST of DY263087 vs. ExPASy Swiss-Prot
Match: ATPG_BART1 (ATP synthase gamma chain OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.796e-11
Identity = 54/189 (28.57%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  226 STQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSR----GLWQPFTALLGDTPTVDAKK----------NVIVTISSDKGLCGGINSTAVKISKSLHRLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP---LNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPT 732
            S + +R+R+ SVK  QKITKAM+MVAA++L   Q  A+++R     +    T++  D   VDA            +++V  ++++GLCG  N    + ++   +      K  K + +G+K   IL RD K    L+I  +  +    + + +  V++    D+     FD   + YS+F SV++  PT
Sbjct:    3 SLKDLRDRIASVKATQKITKAMQMVAAARLHRAQEAAQSARPYAKRMADILTSVAADVDGVDAPALMRGTGRDDVHLLVVCTAERGLCGAFNVQIARRAREQIKALLAAGKIVKIITVGKKGADILSRDYK---SLMIDHIDLHAVKRIGFAEALVISQRIVDLFNEGAFDVCTLFYSEFVSVINQRPT 188          
BLAST of DY263087 vs. ExPASy Swiss-Prot
Match: ATPG_AERHH (ATP synthase gamma chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.796e-11
Identity = 55/193 (28.50%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  238 VRNRMKSVKNIQKITKAMKMVAASKLRAIQVKAENSRGLWQPFTALLGDTP------------TVDAKKNVIVTISSDKGLCGGINSTAVKISKSLHRLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP-----LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVE 765
            +RN++ SVKN QKIT AM+MVAASK+R  Q +   SR   +    ++G                 + K+   + +S+D+GLCGG+N    K + +  +  S    +    ++G KA     R   K ++  +  L  NP     +   +V + A D   N E D L ++Y+KF + +   P +  +L   + E
Sbjct:    7 IRNKIGSVKNTQKITGAMEMVAASKMRRAQDRMSASRPYAETMRKVIGHIAQGNLEYKHPYLIEREVKRVGYIVVSTDRGLCGGLNINLFKAALNDMKQWSAKGAKVDLALIGNKASNFFERHGAK-VKAHVAGLGDNPSVNDLIGSVKVMLKAYD---NGEIDRLYLVYNKFVNTMVQQPRVDQLLPLPVTE 195          
The following BLAST results are available for this feature:
BLAST of DY263087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
ATPG_PROM07.796e-1127.10ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_BART17.796e-1128.57ATP synthase gamma chain OS=Bartonella tribocorum ... [more]
ATPG_AERHH7.796e-1128.50ATP synthase gamma chain OS=Aeromonas hydrophila s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DB05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263087 ID=DY263087; Name=DY263087; organism=Citrus clementina; type=EST; length=1357bp
AGCTCGCACGACCCAAACAGAACATAAAGCTTTGGATCTGCAGCGTTCAA
AATAAAATATTTCTAGGGTTTCCTACGACGACGGTTCATCAGAAAAATGG
CGATGGCTGCTCTGAGGCGCGAAGGCCGGCGATTCGCCACCCCTCTCATC
TCCCCACGTCCAATCGCCGCAATCAGATCCCCTTTCCTTTCCGAGGAGGA
TGCCCCTCTGGGAGTCCGGTCTATTTCAACTCAAATTGTTAGAAACCGGA
TGAAGAGTGTTAAGAATATTCAGAAAATTACAAAGGCTATGAAGATGGTT
GCAGCCTCAAAGTTAAGAGCAATTCAAGTTAAAGCTGAAAATTCCCGTGG
TCTGTGGCAGCCATTCACTGCACTTCTTGGTGACACTCCCACTGTTGATG
CTAAGAAGAATGTTATTGTGACCATCTCTTCTGACAAAGGTCTATGTGGT
GGAATTAACTCTACTGCAGTTAAGATAAGCAAGAGTTTGCACAGGTTGAA
TTCTGGTCCCGACAAAGAAAACAAATACGTCATCTTGGGAGAGAAGGCAA
AGGCAATATTAGTACGTGACTCAAAGAAAGATATTGAACTCATCATAACT
GAGTTACAGAAAAATCCTCTCAATTATACCCAGGTTTCCGTTCTTGCAGA
TGATATCTTAAAGAATGTAGAATTTGATGCTTTGAGGATTATCTATAGCA
AGTTCCATTCCGTGGTCTCCTTTCTGCCGACAATGGCAACTGTATTATCG
CCTGAGCTTGTGGAGAGAGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCT
AGACTCCTATGAAATTGAAGGCGGTGAAACAAAGGGTGAAATACTTCAAA
ATCTGGCTGAGTTCCATTCTCTTGTGTCATGGTTCATGCGGTGTTGGAGA
ATGCCTGCAGTGAGCAGGGGGCAAGGATGTCTGCCATGGATAGCTCAAGC
AGAAATGCAGGAAAAATCTTGATCGCCTCACTCTTACTTATAACAGACTT
CGTCAAGCTTCTATCACCACCAAGTTGAATGAAAATATATCTGGGACCAC
ACCATTGGAAAGGTGAATTAAAAAGCCACCGTGGCTCCCTTTTCTTGGAC
GGGGAGAAATAAATCCTTGGGGGGGAGGTTTTTTTCAACTTTCCAGGTGG
TAACCTTCCCAAAAAAATTTTGTGTGAGGCCATCCCCAAAATCCCCCCCC
CGGGTTTAAAACTTTGGGGAAAATAAACAATATTATCTTTGCTAAATATT
TTTTCAATAAAAATTTTTTTTATATTTCTCTATATTTTTTGTTCCCTCGC
CGAGGGGAGAGAAAAAAAAAAAGGGGGCTGGTGGGGGGGTGTTGGTTGTG
GGGAAAC
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