DY263089

Overview
NameDY263089
Unique NameDY263089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CH3L1_MOUSE (Chitinase-3-like protein 1 OS=Mus musculus GN=Chi3l1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.408e-15
Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 3
Query:  177 GSNFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF 755
            GS  P A I   L TH+  +FA+++S N   T    +++ +    + ++ +N  +K LLS+GG    ++ F+ +AS    R +F+ S     RS  F GLD+ W YP       F TL+ E  +    E +  G+  LLL+AA+S            + I+  LD+ N+M YDF         +ITG  + LF
Sbjct:   39 GSFLPDA-IQPFLCTHIIYSFANISSDNMLSTWEWNDESNYDKLNK-LKTRNTNLKTLLSVGGWKFGEKRFSEIASNTERRTAFVRSVAPFLRSYGFDGLDLAWLYPRLRDKQYFSTLIKELNAEFTKEVQ-PGREKLLLSAALSAGKVAIDTGYDIAQIAQHLDFINLMTYDF----HGVWRQITGHHSPLF 224          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIA1_BACCI (Chitinase A1 OS=Bacillus circulans GN=chiA1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.592e-15
Identity = 77/291 (26.46%), Postives = 126/291 (43.30%), Query Frame = 3
Query:  159 AAYWFSGSNFPVADIDSTLFTHLFCAFADL----------------------NSQNFQVTVSSENQAIFSSFTRT----------------------VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDNAQM----------SDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDF---FYNDDRTGSRITGPPAALFS--PDRSQVSGDSGIRAWIQSGLSPRK*CWGFHFW 854
            AAY   G N+ VADID T  TH+  AFAD+                      N ++  + V +    +   +  T                      ++Q NP +K ++S+GG   S   F+ +A+ AA+R+ F +S+++  R  NF G+D+DWEYP +  +           ++  LL++ R  + A     GK   LLT A   SA Y  A    + I+  +DW N+M YDF   +       + +   PAA  +  PD +  +  +G +  + +G+   K   G  F+
Sbjct:   54 AAY---GRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIISVGGWTWSNR-FSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGK-KYLLTIASGASATY-AANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFY 338          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHI1_APHAL (Chitinase 1 OS=Aphanocladium album GN=CHI1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.921e-14
Identity = 72/255 (28.24%), Postives = 116/255 (45.49%), Query Frame = 3
Query:  147 NAVKAAYW-FSGSNFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTR-------------------TVQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DNAQMSDFGTLLTEWRSAVAAEAR--SSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF----SPDRSQVSGDSGIRAWIQSGLSPRK 830
            NAV    W   G NF  AD+ ++  TH+  +F ++ +       S +  A +                         ++++N  +K +LSIGG   S  +F A AS AA+RK+F  S++   +   F G+DIDWEYP D  Q  +   LL   RS + + A   + G   LL  AA +   NY       + +   LD+ N+MAYD+      + S  TG  A ++    +P+ +  + D  ++A+I  G+   K
Sbjct:   40 NAVYFTNWGIYGRNFQPADLPASEITHVLYSFMNVRADG--TIFSGDTYADYEKHYAGDSWNDVGTNAYGCVKQLYLLKKQNRNMKVMLSIGGWTWST-NFPAAASSAATRKTFAQSAVGFMKDWGFDGIDIDWEYPADATQAQNMVLLLQAVRSELDSYAAQYAKGHHFLLSIAAPAGPDNYNKL--KFAELGKVLDYINLMAYDY----AGSWSNYTGHDANIYANPQNPNATPYNTDDAVQAYINGGVPANK 285          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHI4_TRIHA (42 kDa endochitinase OS=Trichoderma harzianum GN=chit42 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.394e-14
Identity = 73/242 (30.17%), Postives = 113/242 (46.69%), Query Frame = 3
Query:  183 NFPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRT-------------------VQQKNPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYP-DNAQMSDFGTLLTEWRSAVAAEAR--SSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALF----SPDRSQVSGDSGIRAWIQSGLSPRK 830
            NF  AD+ ++  TH+  +F +L +      +S +  A +                         V++ N  +K LLSIGG   S  +F + AS  A+RK+F  ++I   +   F G+DIDWEYP D  Q S+   LL E RS   A A   + G   LL  AA +   NY  +    + +   LD+ N+MAYD+      + S +TG  A LF    +P+ +  + DS ++ +I  G+   K
Sbjct:   53 NFQPADLVASDVTHVIYSFMNLQADG--TVISGDTYADYEKHYADDSWNDVGTNAYGCVKQLFKVKKANRGLKVLLSIGGWTWST-NFPSAASTDANRKNFAKTAITFMKDWGFDGIDIDWEYPADATQASNMILLLKEVRSQRDAYAAQYAPGYHFLLTIAAPAGKDNY--SKLRLADLGQVLDYINLMAYDY----AGSFSPLTGHDANLFNNPSNPNATPFNTDSAVKDYINGGVPANK 285          
BLAST of DY263089 vs. ExPASy Swiss-Prot
Match: CHIT2_DROME (Probable chitinase 2 OS=Drosophila melanogaster GN=Cht2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.067e-12
Identity = 61/235 (25.96%), Postives = 96/235 (40.85%), Query Frame = 3
Query:  186 FPVADIDSTLFTHLFCAFADLNSQNFQVTVSSENQAIFSSFTRTVQQK-------NPAVKALLSIGGGNASKESFAAMASQAASRKSFIDSSINLARSLNFHGLDIDWEYPDN-----AQMSDFGTLLTEWRSAVAAEARSSGKPALLLTAAVSYSANYFGAINPTSAISNSLDWTNVMAYDFFYNDDRTGSRITGPPAALFSPDRSQVSGDSGIRAWIQSGLSPRK*CWGFHFW 854
            + + + D  L TH+  AFA L+     +      Q +   + +   +K       +P +K  L+IGG N    +++ + +    R  F+    +  R  NF GLD+DWEYP       A   +F  L  E R           +  LLLT+A+  S            IS  LD+ ++M YD+  + DR      G  A L +P    +S    I   ++ G  P K   G  F+
Sbjct:   60 YAIENFDPNLCTHVVYAFAGLDITQAAIKSLDPWQDLKEEYGKGGYEKMTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLRGRFVKQVSSFIRKYNFDGLDLDWEYPTQRKGKPADRENFVLLTKELR-------EEFDEHGLLLTSAIGASKKVIDEAYDVRQISRYLDYLHIMCYDYHGSWDRR----VGYNAPLTAPADDPLSVKFSIDYLLKLGAPPEKLVMGLPFY 283          
The following BLAST results are available for this feature:
BLAST of DY263089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CH3L1_MOUSE3.408e-1531.09Chitinase-3-like protein 1 OS=Mus musculus GN=Chi3... [more]
CHIA1_BACCI7.592e-1526.46Chitinase A1 OS=Bacillus circulans GN=chiA1 PE=1 S... [more]
CHI1_APHAL4.921e-1428.24Chitinase 1 OS=Aphanocladium album GN=CHI1 PE=1 SV... [more]
CHI4_TRIHA8.394e-1430.1742 kDa endochitinase OS=Trichoderma harzianum GN=c... [more]
CHIT2_DROME2.067e-1225.96Probable chitinase 2 OS=Drosophila melanogaster GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10DB07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263089 ID=DY263089; Name=DY263089; organism=Citrus clementina; type=EST; length=1206bp
CCGCAAACTTGTATGTTAAGTGCTTCCGAGCGCAATTAAAGAGCAGCAAT
ATTTATCAACTCTCTTTCGATATGGCACCCAAAATCCTGCCTGTTTTGCT
TTCTTTCACCCTCCTTCTCCTCCAGCTACACTCCTCTGCCGGGCAAAATG
CTGTCAAAGCAGCTTACTGGTTCTCCGGCTCCAATTTTCCCGTGGCCGAC
ATCGATTCCACCCTTTTCACTCACCTTTTCTGTGCTTTTGCTGATCTCAA
TTCTCAAAACTTCCAGGTAACCGTTTCATCCGAAAACCAAGCCATATTCT
CATCCTTCACAAGAACCGTCCAGCAGAAAAACCCTGCAGTCAAAGCCCTC
TTGTCAATCGGCGGCGGAAATGCAAGTAAAGAATCGTTTGCAGCAATGGC
CAGCCAGGCAGCTTCCCGCAAGTCATTCATCGACTCTTCTATCAACCTCG
CCAGGTCTCTAAATTTCCACGGTCTCGACATTGACTGGGAGTACCCGGAC
AACGCACAGATGTCAGACTTCGGAACCCTTCTCACTGAATGGCGTTCAGC
CGTGGCCGCCGAGGCAAGATCCTCCGGGAAGCCAGCGTTGCTCCTCACCG
CCGCGGTTTCTTACTCGGCAAACTATTTTGGCGCGATTAACCCTACTAGC
GCAATATCAAACAGCTTGGATTGGACCAACGTGATGGCTTACGACTTCTT
TTATAATGATGACCGAACCGGTTCAAGAATCACCGGACCGCCGGCTGCGT
TATTCAGTCCTGACAGGAGCCAAGTTAGTGGAGATTCAGGAATCAGAGCC
TGGATCCAGTCTGGCTTGTCTCCCAGAAAATAGTGCTGGGGTTTCCATTT
TTGGCCATTCGTTGCAGCTTGCAAATGCTAATAATCACGGCTTTTGGGGC
TCAACGAGTGGAACTGTGAATGGGTGGGGTGATGTCATATAAAGGAAATC
AGGCAGTTTTATAATGTCAACGAATGCAACGAAAGTATTCAATGCCACTG
TTTGTTTCGAATAATGCTACAAGGGGAATACTTGAAATCGAAAATGAAGA
AACCCAGAGTGTTAACACATAAGGTAAAATAGCCCAAGAACACGGAAATT
CCTGGGTTAATTTTGCTTGGAAATTTTCCAAAAAGAAAAATTGGAAAACT
TTTCTGGGAAAACTTCCCCGAAAAATGGGGGGGAAAAAAAGGGACAAAAT
TCTTTT
back to top