DY263099

Overview
NameDY263099
Unique NameDY263099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: STAM2_HUMAN (Signal transducing adapter molecule 2 OS=Homo sapiens GN=STAM2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.059e-17
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYW---AYEDLRRYGVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVE 776
            V+KAT+E   + DW++ +DICD + S    AKD +KA+ KR+ HK   V L ALTLL   V NCG   H ++  R+   E+  ++K K   ++ +K+  L+  W E F     K PQ+       + ++  G+ F            PP    T+  A A  G  SN ++  DE +A  +E
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKSMKEEGITF------------PPAGSQTV-SAAAKNGTSSNKNKE-DEDIAKAIE 175          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: TOM1_DICDI (Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.990e-17
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  234 TVAVDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVK-IVKKKPDMQLRDKILVLLDSWQEAFGGPGGKH--PQYYWAYEDLRRYGVQFPKRSPDA 659
            T  VDKAT+ELLI  DWT  + I D +N     A+ VV+ V K+L+ + S+V LLAL L +++++NC    H   AER    E+ + I+ KK  + +++K L +++SW  AF     +H  P +Y  Y  ++R G +FP +  DA
Sbjct:    3 TELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDR-SRVILLALELADSLLQNC-HCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAF---QARHDVPGFYETYSFIKRSGYKFPPKPSDA 142          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: STAM2_MOUSE (Signal transducing adapter molecule 2 OS=Mus musculus GN=Stam2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 7.823e-17
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYW---AYEDLRRYGVQFP 641
            V+KAT+E   + DW++ +DICD + S    AKD +KA+ KR+ HK   V L ALTLL   V NCG   H ++  R+   E+  ++K K   ++ +K+  L+  W E F     K PQ+       + ++  GV FP
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKSMKEEGVTFP 144          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: STAM2_RAT (Signal transducing adapter molecule 2 OS=Rattus norvegicus GN=Stam2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.276e-16
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYW---AYEDLRRYGVQFP 641
            V+KAT+E   + DW++ +DICD + S    AKD +KA+ KR+ HK   V L ALTLL   V NCG   H ++  R+   E+  ++K K   ++ +K+  L+  W E F     K PQ+       + ++  GV FP
Sbjct:   13 VEKATNEYNTTEDWSLIMDICDRVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF----QKDPQFSLISATIKAMKEEGVTFP 144          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_EMENI (Class E vacuolar protein-sorting machinery protein hse1 OS=Emericella nidulans GN=hse1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.130e-15
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  240 AVDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIV-KKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAP 665
            AV KAT E L S +W   +D+CD + + +  AKD V A+ KRL H+N+ VQL  L L   + +NCG  +H ++A R+    ++++   +    Q++ KIL  ++ W E F      +P +    +   +   Q P   P + P
Sbjct:   12 AVAKATDENLTSENWEYILDVCDKVGAEESGAKDAVAALIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLAGDRNTHQQVKSKILERMEDWTEMF----ASNPDFGIMEQAFMKLRTQNPNLQPPSKP 150          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_ASPNC (Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=hse1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.927e-15
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  240 AVDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVK-KKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAP 665
            AV KAT E L S +W   +D+CD + + +  AKD V A+ KRL H+N+ VQL  L L   + +NCG  +H ++A R+    ++++   +    Q++ KIL  +  W E F      +P +    +   +   Q P   P + P
Sbjct:   12 AVAKATDENLTSENWEYILDVCDKVGAEESGAKDAVAAMIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLANDRNTHQQVKSKILERMQEWTEMF----ASNPDFGIMEQAYMKLKTQNPNLQPPSKP 150          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_ASPCL (Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus clavatus GN=hse1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.323e-15
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 3
Query:  240 AVDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVK-KKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPI 668
            AV KAT E L S +W   +D+CD + + +  AKD V A+ KRL H+N+ VQL  L L   + +NCG  +H ++A R+    ++++   +    Q++ KIL  +  W   F      +P +    +   +   Q P   P + P+
Sbjct:   12 AVAKATDENLTSENWEYILDVCDKVAAEESGAKDAVAAMIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLANDRNTHQQVKSKILERMHDWTRMF----SSNPDFGIMEQAYMKLKTQNPNLQPPSKPV 151          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_NEOFI (Class E vacuolar protein-sorting machinery protein hse1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hse1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.564e-15
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  240 AVDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVK-KKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAP 665
            AV KAT E L S +W   +D+CD + + +  AKD V A+ KRL H+N+ VQL  L L   + +NCG  +H ++A R+    ++++   +    Q++ KIL  +  W + F      +P +    +   +   Q P   P + P
Sbjct:   12 AVAKATDENLTSENWEYILDVCDKVAAEESGAKDAVAAMIKRLAHRNANVQLYTLELANALAQNCGPKIHRELASRSFTDALLRLANDRNTHQQVKPKILERMQEWAQMF----ANNPDFGIMEQAYMKLKTQNPNLQPPSKP 150          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: VPS27_YARLI (Vacuolar protein sorting-associated protein 27 OS=Yarrowia lipolytica GN=VPS27 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.249e-14
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  243 VDKATSELLIS--PDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKK-KPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAPI 668
            V+KATSE L S   D  +N++ICD I S    AKD ++++K+RL ++N  VQL AL L +  +KN G     +IA R  +  ++ I +    + ++R ++L LL  W  AF G   +  Q   A   L+  GV FP  S D A +
Sbjct:   14 VEKATSESLPSGESDLALNLEICDLIRSKTVPAKDAMRSLKRRLLNRNPNVQLAALQLTDVCIKNGGSHFLVEIASREFVDPLMAIARNDDANPEVRQRVLQLLQQWAVAFAGQ-LQLQQVENAVTQLKSEGVSFPSASHDNAAV 157          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_ASPTN (Class E vacuolar protein-sorting machinery protein hse1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hse1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.249e-14
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  240 AVDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVK-KKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFPKRSPDAAP 665
            AV KAT E L S +W   +D+CD + + +  AKD V A+ KRL H+N+ VQL  L L   + +NCG  +H ++A R+    ++++   +    Q++ KIL  +  W E F      +P +    +   +   Q P   P + P
Sbjct:   12 AVAKATDENLTSENWEYILDVCDKVAAEESGAKDAVAALIKRLAHRNANVQLYTLELGNALAQNCGPKIHRELASRSFTDALLRLANDRNTHQQVKAKILERMQEWTEMF----ASNPDFGIMEQAYMKLKTQNPNLQPPSKP 150          
The following BLAST results are available for this feature:
BLAST of DY263099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
STAM2_HUMAN2.059e-1732.60Signal transducing adapter molecule 2 OS=Homo sapi... [more]
TOM1_DICDI5.990e-1737.93Target of Myb protein 1 OS=Dictyostelium discoideu... [more]
STAM2_MOUSE7.823e-1736.03Signal transducing adapter molecule 2 OS=Mus muscu... [more]
STAM2_RAT2.276e-1636.03Signal transducing adapter molecule 2 OS=Rattus no... [more]
HSE1_EMENI1.130e-1531.47Class E vacuolar protein-sorting machinery protein... [more]
HSE1_ASPNC1.927e-1531.47Class E vacuolar protein-sorting machinery protein... [more]
HSE1_ASPCL7.323e-1530.56Class E vacuolar protein-sorting machinery protein... [more]
HSE1_NEOFI9.564e-1530.77Class E vacuolar protein-sorting machinery protein... [more]
VPS27_YARLI1.249e-1436.55Vacuolar protein sorting-associated protein 27 OS=... [more]
HSE1_ASPTN1.249e-1431.47Class E vacuolar protein-sorting machinery protein... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DC05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263099 ID=DY263099; Name=DY263099; organism=Citrus clementina; type=EST; length=1175bp
ATAACGTNTGAAGGTAAAAAAAAAAAAAAGAATATATAAATTCTNTTGAG
CTTGAAAGCATTCATTGGGCGGTGTATTTTTCTTGGACCGAATTTTCTCG
TTAAACAAACAAACAAACAAACAAACAGGAAAAAGTTTTCATTTTCTTTT
TCTGTTATCTAATTTGGAGGGAGAGATAGAGAGTAAAGATGATGTCGTCA
TCGTCGTCGTCGTCGTCGTCGTCGTCTTCGGCGACTGTGGCAGTTGACAA
GGCGACCAGCGAGCTTTTGATTAGTCCTGATTGGACTATGAACATCGATA
TCTGTGATTCCATCAATTCTCATCAGTGGCAGGCGAAAGATGTTGTGAAA
GCAGTGAAGAAAAGGTTACAGCACAAGAACTCAAAAGTGCAACTTCTTGC
GTTGACGCTTTTAGAGACGATGGTGAAGAATTGTGGTGATTTTGTTCATT
TTCAAATTGCTGAGAGGAATGTCTTGGGAGAGATGGTTAAAATTGTGAAG
AAGAAGCCAGATATGCAGCTGAGGGATAAAATCTTGGTTTTATTAGATTC
TTGGCAAGAGGCATTCGGTGGACCTGGGGGAAAACATCCTCAGTACTACT
GGGCTTATGAGGATTTAAGGCGTTATGGAGTACAATTTCCCAAGCGTTCA
CCAGATGCTGCTCCTATATTTACACCTCCTGTTTCCCACCCCACTCTAGG
ACAAGCTCAAGCTAGTTATGGAATGCCTAGCAATTCCTCAAGAAGGCTTG
ACGAAACAATGGCGACAGAGGTTGAAACTTTAAGTTTTTCAAGCTTGGAT
TCTATGCGAGATGTTATGGAGCTGTTAAGTGACATGCTGCAAGCTGTAAA
TCCTAGCGACCGTGAGGCAGTAAAGATGAGGTAATTGTTGATCTCGTCAG
TCGGTGTCGGTCCATCAAAAAAACTCATGCAGATGCTACTACACCCGGGG
ATGAGGAACTTTCTGCCGGGGTCTTGAATAAAGGACATTCTGGAAACTTT
GCTGCAAAAATGACGCTAAAACATCTGGTTTGCCATAACAACGGAATTAC
AAATTAATTCCAAACCAATGAAAAAATGCCCGCACCAACCCCAAAACAAC
GGAGCCTGGGAATCGAGCCCAAAACATAAGGGAACCCCCCCGCCCCGGTT
GTGTAGGTGGAAGAGGGCCCCATCT
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