DY263108

Overview
NameDY263108
Unique NameDY263108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1331
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263108 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.447e-11
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  673 DRDQAKVEHYKGVRTRPWGRYAAEIIDPKNNGARVWLGTYDTPEGAALCYDRAAYEMHDSRAKHDF 870
            + + AK   Y+GVR RPWGRYAAEI DP     RVWLGT+DT + AA  YD AA +    +AK +F
Sbjct:   22 ESNAAKEIRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86
[Close]
BLAST of DY263108 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.447e-11
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  628 LDMVTYHHTAGLAARDRDQAKVEHYKGVRTRPWGRYAAEIIDPKNNGARVWLGTYDTPEGAALCYDRAAYEMHDSRAKHDFP 873
            L  +T     G AA+   + +   ++G+R RPWG++AAEI DP+  G RVWLGT+++ E AA  YD  A  +   +AK +FP
Sbjct:   96 LSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPR-KGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176
[Close]
BLAST of DY263108 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.585e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  700 YKGVRTRPWGRYAAEIIDPKNNGARVWLGTYDTPEGAALCYDRAAYEMHDSRAKHDFPHL 879
            Y+GVR R WG++ AEI  P+N   R+WLGT+DT E AAL YD+AAY++    A+ +FP+L
Sbjct:  152 YRGVRQRHWGKWVAEIRLPRNR-TRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL 210
[Close]
BLAST of DY263108 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.585e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  700 YKGVRTRPWGRYAAEIIDPKNNGARVWLGTYDTPEGAALCYDRAAYEMHDSRAKHDFPHLL 882
            Y+GVR R WG++ AEI  PKN   R+WLGT++T E AAL YD+AA+++    AK +FP+L+
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNR-TRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLI 130
[Close]
BLAST of DY263108 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.906e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  700 YKGVRTRPWGRYAAEIIDPKNNGARVWLGTYDTPEGAALCYDRAAYEMHDSRAKHDFP 873
            ++GVR RPWGR+AAEI DP    ARVWLGT+D+ E AA  YD AA  +   +AK +FP
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84
The following BLAST results are available for this feature:
BLAST of DY263108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ERF79_ARATH4.447e-1153.03Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF1_ORYSJ4.447e-1141.46Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP24_ARATH7.585e-1153.33Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF56_ARATH7.585e-1152.46Ethylene-responsive transcription factor ERF056 OS... [more]
ERF82_ARATH9.906e-1156.90Ethylene-responsive transcription factor 3 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263108 ID=DY263108; Name=DY263108; organism=Citrus clementina; type=EST; length=1331bp
ATCGGTTTGAAATTAAACTGAAATCGATATATTCTCACTTCTCACACGTG
GGCTGTCTCACGTCCACTTGCGAAAAAATAAATTTTCACTTGTAATTTTT
CAGAAATGTATTCGGAAAGTATTTCTCAAACGGATATGGCTCTCTTGGAG
TCAATCCGGCATCATCTTCTAGATGATGACTTCGAAGACATAAATTCAAT
GATGCAACCACTACAAGTAGAAAACGTTAATTCATCAATATTGCAACAGC
ACCAGCACCGGCAGCAACATCAGCAGCAGCAAATGCCTCTAGAAAATTTT
TCATAATCAGATTTTGATCTTCTTCAAAATCTTCTCGAGGACGTAAACAC
AACCTCATCTTTTGAATCGGATTACTTAAACAATGCACCCTCCGTGTACT
CACCAACTTCGAGCTTCGGCAGTGCCGTCTTTGATTTTCCACTACAAGTA
ACACGTAAGGTTGTTATTAACAATAACAACAACTACCCAATCCCTTCCTA
TGGCTGCTATGATCATCCCAAAGCCTTAAACGACGCCGTTGACAGCGTGG
GTTGGATTTCCTTTGATCATCATCAAGCTGATCAGGATGATCAAGCAATA
AGCGAAACCGCCGCAGCCGCCGCTACCCTTGATATGGTGACTTACCACCA
TACGGCGGGGTTGGCAGCACGTGATCGTGATCAAGCGAAGGTGGAGCATT
ACAAGGGGGTGAGGACGAGGCCATGGGGGAGATATGCGGCTGAGATTATA
GACCCTAAGAATAACGGGGCACGTGTTTGGCTTGGCACTTATGATACCCC
TGAGGGCGCAGCCTTGTGCTATGATAGAGCCGCGTACGAGATGCATGACT
CTAGAGCTAAGCATGATTTTCCTCACTTACTTGTCAGGGTTAATTTTAAG
CTCGTTCGTGTCAACACGACCCACACCACTAAGCGTGTCTCACCAGAGTC
CGAGGCTGAACTTTCTTCTAACTCTTCATCATCATCCCCTTCTTCGACTA
CTTCTTCACCGTCATCTTTTGTTAATGGTGGCCGGAAGATTCCCCAAACC
CTAACCGAAAAAAGAACAAGGGGACAAACCGCGGTGGCTTGATCCTAAAA
CCTGAACCTGGAACCCGGTCCTCTCCAATAAAAAAAAAAAGGGAAACGAG
CAAAAAGGGGGGAAACCCCCTCCCGGGCAACCTAAACCGAAACCTTTTCC
CAAAAATTTATTCTTTAAAAAATTTAATTTTGGTGCCCGCCTTTTTCTTC
ATCTTTAAAAAAAAGAAAGCGAGACCCCCCGTGGGGGTTGTTGAGGTAAA
ACCCCTTTTTTTTTGTTTTATAATTTTATTA
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