DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUAB (Peptidyl-tRNA hydrolase OS=Brucella abortus GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YK+    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKMTPADLVVIYDELDLVPGKLRIKTGGGSGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUA2 (Peptidyl-tRNA hydrolase OS=Brucella abortus (strain 2308) GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YK+    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKMTPADLVVIYDELDLVPGKLRIKTGGGSGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_TERTT (Peptidyl-tRNA hydrolase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 56/188 (29.79%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFG---QGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            + VGLGNPG +Y  TRHN G + ++  A + G  +  V+    FG   +  +    V L  P T+MN SG++   LA ++K+  + +LV HD++ LP G                + ++     N+EF RLRIGIG P       +++L+K  A     I+ A       L  L++    ++ R  +T
Sbjct:    7 MIVGLGNPGTEYANTRHNAGQDFVENLARALGQPL--VNTPKHFGFTTRISLAGKDVRLLVPTTFMNRSGQAVASLANFFKIAPDNILVVHDELDLPPGTAKLKIGGGHGGHNGLRDIIAALGNNKEFGRLRIGIGHPGNAKQVASYVLKKAPADEYRLIEDAQTAAERTLTDLVAGDWEKAMRELHT 192          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RICAE (Peptidyl-tRNA hydrolase OS=Rickettsia africae (strain ESF-5) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 58/181 (32.04%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 855
            L +GLGNPG +Y+ TRHNVGF  I+  A     S +T    +C+    +       ++  KP TYMNLSG+S   +  YY +   ++ V HDD+ L  G                KS+ +   GN  + R+RIG+GRP    D   ++L  F+    E +  A+        L+L   L E
Sbjct:    3 LVIGLGNPGKEYQYTRHNVGFIAIEKIANQYNSSFSTKKKFNCE--IAETISDGQKIIFIKPTTYMNLSGKSVISVKTYYNIYPAKIFVIHDDIDLDTGRIKFKTGGGNGGHNGLKSI-DGVIGN-NYNRIRIGVGRPQNNQDVADYVLNHFSKPEYETVMQAIDRITSNFGLILENKLEE 179          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PSEPW (Peptidyl-tRNA hydrolase OS=Pseudomonas putida (strain W619) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 54/186 (29.03%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDA-PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y+ TRHN G   ++  A +Q +S+            F      V L  P TYMN SG+S   LA ++++    +LV HD++ LP GV               + ++       +F RLR+GIG P        F+L +     +E++D ++   + VL  +L+    ++ R  ++
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERIASAQRVSLTADRKYFGLTAKFSHQGNDVRLLIPTTYMNRSGQSVAALANFFRIKPEAILVAHDELDLPPGVAKLKRGGGHGGHNGLRDIIAQLGNQNDFHRLRLGIGHPGDAKLVSNFVLGRAPRAEQEKLDASIDFALGVLPDVLAGDFAKAMRELHS 191          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PERMH (Peptidyl-tRNA hydrolase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 54/178 (30.34%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  328 VGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV-GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 858
            +GLGNPG +Y+ TRHNVGF + D  A    +  N  + +  F   +V  D  +L+ KPQT+MN SG +   L   Y L  + +LV +DD+ LP G                +S++ + + + EF R+++GIGRP  +     ++L  F    +  +D  +    + +  +L  G+ +S
Sbjct:    6 IGLGNPGKQYEDTRHNVGFMIADVVASL--LKCNKKYIERCFSHIYVCEDHYLLIVKPQTFMNNSGVAVKNLLEDYDLKPDEILVVYDDLDLPLGTVRLRKKGSSGGHRGIQSIIESIKTD-EFPRIKVGIGRPERKEQVVDYVLSPFKKEEKILLDKVISHTAQCILNVLKYGIDKS 180          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_MYCGA (Peptidyl-tRNA hydrolase OS=Mycoplasma gallisepticum GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF 768
            L VGLGNPG +Y+ TRHN+GF++ID   +   + +N    K+ F   +V     ++AKP TYMNLSG     L  +YK+ ++ +LV HD++    GV                ++++   G + F RLR+GI +     +  +F+L KF
Sbjct:    3 LIVGLGNPGFEYEHTRHNIGFKIIDKLLDVLNLELN----KSQFNGLYVKHDDFIIAKPLTYMNLSGNFIRQLVNFYKIQIDDILVIHDELAFNLGVVRLKQNGSANGQKGVANIISQL-GTQNFKRLRVGI-KNEDLKNIASFVLSKF 145          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_LACRJ (Peptidyl-tRNA hydrolase OS=Lactobacillus reuteri (strain JCM 1112) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 54/171 (31.58%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLK 828
            + VGLGN G +Y  TRHN GF ++D  A    +   T H K  A    G +    V+L KP T+MN SG + GPL  YY + L+ +++ +DD+ +P G                KS++ +  G + F R+++GI  P       + +L KF+   R + D A+++    L+
Sbjct:    3 MIVGLGNIGTRYDETRHNTGFMVVDQLARDYHLGAFT-HLKQEAVAVSGVINGEKVMLVKPTTFMNDSGRAVGPLVDYYDIDLDDLVIVNDDLDMPVGKVRLKTHGASGGHNGLKSII-SVLGTKNFNRVKVGIDHPQ-HGTVVSHVLGKFSKEERPKFDQAVEQAEHALE 170          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_LACRD (Peptidyl-tRNA hydrolase OS=Lactobacillus reuteri (strain DSM 20016) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 54/171 (31.58%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLK 828
            + VGLGN G +Y  TRHN GF ++D  A    +   T H K  A    G +    V+L KP T+MN SG + GPL  YY + L+ +++ +DD+ +P G                KS++ +  G + F R+++GI  P       + +L KF+   R + D A+++    L+
Sbjct:    3 MIVGLGNIGTRYDETRHNTGFMVVDQLARDYHLGAFT-HLKQEAVAVSGVINGEKVMLVKPTTFMNDSGRAVGPLVDYYDIDLDDLVIVNDDLDMPVGKVRLKTHGASGGHNGLKSII-SVLGTKNFNRVKVGIDHPQ-HGTVVSHVLGKFSKEERPKFDQAVEQAEHALE 170          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_AZOSB (Peptidyl-tRNA hydrolase OS=Azoarcus sp. (strain BH72) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.341e-17
Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  304 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVG---DAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGV 816
            + A P L VGLGNPG +Y  TRHN GF   +  A++ G+  +    ++ F  G V    +A V L  PQTYMN SG++ G LA +Y++    +LV HD++ +P G                K    +  G  ++ RLR+GIG P  + +   F+L+      +  ID +L   +
Sbjct:    2 SAAPPRLVVGLGNPGAEYSETRHNAGFWFCERLADTLGVRFSH---ESRF-HGLVANAREAGVWLLMPQTYMNRSGQAIGALARFYRIAPAEILVVHDELDIPPGQLRLKFGGGLGGHNGLKDTSAHL-GTNDYWRLRVGIGHPGDRNEVVNFVLKPARREEQTLIDESLDRAL 170          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BRUAB6.387e-1732.32Peptidyl-tRNA hydrolase OS=Brucella abortus GN=pth... [more]
PTH_BRUA26.387e-1732.32Peptidyl-tRNA hydrolase OS=Brucella abortus (strai... [more]
PTH_TERTT8.341e-1729.79Peptidyl-tRNA hydrolase OS=Teredinibacter turnerae... [more]
PTH_RICAE8.341e-1732.04Peptidyl-tRNA hydrolase OS=Rickettsia africae (str... [more]
PTH_PSEPW8.341e-1729.03Peptidyl-tRNA hydrolase OS=Pseudomonas putida (str... [more]
PTH_PERMH8.341e-1730.34Peptidyl-tRNA hydrolase OS=Persephonella marina (s... [more]
PTH_MYCGA8.341e-1734.23Peptidyl-tRNA hydrolase OS=Mycoplasma gallisepticu... [more]
PTH_LACRJ8.341e-1731.58Peptidyl-tRNA hydrolase OS=Lactobacillus reuteri (... [more]
PTH_LACRD8.341e-1731.58Peptidyl-tRNA hydrolase OS=Lactobacillus reuteri (... [more]
PTH_AZOSB8.341e-1732.76Peptidyl-tRNA hydrolase OS=Azoarcus sp. (strain BH... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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