DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BACA2 (Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaciens (strain FZB42) GN=pth PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.860e-25
Identity = 68/184 (36.96%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 873
            +  GLGNPG  Y+ TRHNVGF  ID  ++   I +N       +G GFV    VLL KP TYMNLSGE   P+  YY      + V +DD+ LP G                KS++ +  G  EF R+RIGIGRP   M    ++L  F       I+ A+ + V+  +  L+K   E    FN
Sbjct:    3 VIAGLGNPGKTYENTRHNVGFMAIDELSKEWNIELNKTKFNGLYGMGFVSGKKVLLVKPLTYMNLSGECLRPILDYYDADHEDLKVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTPEFDRVRIGIGRPVNGMKVVDYVLGAFTKEEAPHINDAVSKTVKACEASLTKPFLEVMNEFN 185          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_THETN (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis GN=pth PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.736e-25
Identity = 64/185 (34.59%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 873
            ++  GLGNPG +Y+GTRHNVGF +IDA ++  GI ++ +  K+  G+G      V+L KPQT+MNLSGE+      +YK+PL  V+V +DD  L  G                 S++     + +F R+RIGIG+P    D    +L +F+   ++ ID A++   E +  ++  G+  +   FN
Sbjct:    2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKPQTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGMNSII-YLLNSEDFPRVRIGIGKPE-DGDLVRHVLGRFSDEEKKVIDEAVERAAEAVIDIMENGIEHAMSRFN 184          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_SYNJB (Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pth PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.736e-25
Identity = 67/187 (35.83%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 879
            L VGLGNPG +Y  TRHN GF ++D  A+  GI +      + ++G+GF       L KP+TYMN SG+S   +  +YKL L  VLV +DDM LP G                KS++ +  G+  F RLR+G+G+P G  D    +L  F    +E ++  L   VE ++    +GL  +   FN +
Sbjct:   16 LVVGLGNPGPQYANTRHNCGFMVVDRLAQRWGIPLVLEKRFQGSYGEGFALGGKRRLLKPETYMNRSGQSVRAVLDWYKLDLASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSIIQHL-GSEAFPRLRLGVGKPKGSQDVVGHVLGGFAPAEQEVLERVLDVAVEAVECCWQEGLRTAMNRFNPL 201          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_MANSM (Peptidyl-tRNA hydrolase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pth PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.736e-25
Identity = 66/188 (35.11%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 873
            L VGLGNPGDKY  TRHN G  +++  A     ++     +A F     +  +G   V    P T+MNLSG++ G LA +Y++    +LV HD++ LP GV               K  +     N+ F RLRIGIG P  +    A++L K + I R  ID AL E    +++LL  G+T++    N
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLVERLARRFNFNLKD---EAKFFGKTARAVIGGEEVRFLIPTTFMNLSGKAVGALATFYRIKPEEILVIHDELDLPPGVAKIKQGGGHGGHNGLKDTIAQLANNKNFYRLRIGIGHPGDKNLVSAYVLSKPSPIDRSAIDKALDEAASCMEILLKDGITKATNRLN 190          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_MYXXD (Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (strain DK 1622) GN=pth PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.372e-25
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKA------FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 873
            L VGLGNPG +Y+  RHN+GF +++A        +N     A  GQG +    VL  +PQT+MNLSG S    A ++K+P+  VLV HD++ LP G                KS++++  G+  F RLR GIG+P G   P A      ++L  F+   R  +D  +   +++ +L + +GL+ +   FN
Sbjct:    3 LIVGLGNPGREYERHRHNIGFMVVEALLSRARAQLNQEKFAAKVGQGTLAGERVLFVEPQTFMNLSGRSVAEAARFFKVPVADVLVIHDELDLPLGRLQLKAGGGSGGHNGLKSIVSSL-GDESFIRLRFGIGKPEG---PNARERVSDYVLSNFDDGERREMDALIDRAMDMTELWIREGLSVAMNRFN 188          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_EXISA (Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pth PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.372e-25
Identity = 63/163 (38.65%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  328 VGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGV 816
            VGLGNPG K++ TRHNVGF  ID  AE  GIS+N     A  G G +    V+L KP TYMNLSGE+  P+  YYK+ ++ +LV +DD+ +  G                KS++ +  G  EF RL++GIGRPP  +    ++L  +       ++  L   V
Sbjct:    5 VGLGNPGKKFEMTRHNVGFLAIDRLAEKHGISLNEAKFNALMGTGRINGERVVLVKPLTYMNLSGEAVRPILDYYKIEIDDLLVIYDDLDMVPGKLRFRPKGSAGGHNGIKSLIQHL-GTAEFKRLKLGIGRPPHPIKVVDWVLMNYRKDELPELNETLDNAV 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_CLOPS (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain SM101 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.372e-25
Identity = 64/186 (34.41%), Postives = 99/186 (53.23%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 879
            L VGLGNPG +Y+ TRHN+GF++ID  A    I +N    K   G+GF+ +  V+L KP TYMNLSGES      +YKL  + ++V +DD+ L  G                KS++ N  G++ F R+++G+G+P   +     +L KF+   RE I+  +    + +  ++     ES   FN +
Sbjct:    3 LIVGLGNPGKQYEKTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIREFVNFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMNKFNGV 185          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_CLOB8 (Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pth PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.372e-25
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF----NAIARERIDTALQEGVEVLK 828
            +L VGLGNPG++Y+ TRHN+GF++ID  A+   I +N    K  +G+GF+    V+L KP TYMNLSGES   +  +Y L  + +LV +DD+ L  G                KS++ +   +  F+R+++G+G+P G  D    +L KF     AI  E I+ + +   E++K
Sbjct:    2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLKPTTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAHL-NSEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIK 172          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_GEOTN (Peptidyl-tRNA hydrolase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=pth PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.322e-25
Identity = 62/184 (33.70%), Postives = 95/184 (51.63%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 873
            LFVGLGNPG +Y+ TRHN+GF +ID  A+   +S+ T   +  FG   V    V L KP TYMNLSGE   PL  +Y + ++ V++ +DD+ LP G                KS++++  G  +F R+RIGIGRP        ++L +F    +  +  A+    +  +  ++    +    FN
Sbjct:    3 LFVGLGNPGKEYEQTRHNIGFFVIDELAKRWNVSLKTAKFRGLFGTASVFGEKVALCKPLTYMNLSGECVCPLIDFYDIAVDDVIIIYDDLDLPPGKIRLRLKGGSGGHNGVKSIIHHL-GTEQFKRIRIGIGRPTNGQPVADYVLSRFTEEEKPAVMEAVLRAADACEQAVTTPFIQVMNDFN 185          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_ALKMQ (Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pth PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.322e-25
Identity = 63/185 (34.05%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 873
            ++ VGLGNPG KY GTRHNVGF++ID  A   GI++N +  KA +G+  +G   V+LAKPQT+MNLSGES   +  +YK+    ++V +DD+ +  G                KS +   + +  F R+RIG+GRP    D   ++L  F       +  +L+     ++ ++  G+ ++   +N
Sbjct:    2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKPQTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGMKSTIYQLQTD-AFPRIRIGVGRPEFG-DLSNYVLGSFTKDEIPLMKESLERATLTVESIVIDGIDKAMNRYN 184          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BACA22.860e-2536.96Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaci... [more]
PTH_THETN3.736e-2534.59Peptidyl-tRNA hydrolase OS=Thermoanaerobacter teng... [more]
PTH_SYNJB3.736e-2535.83Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pt... [more]
PTH_MANSM3.736e-2535.11Peptidyl-tRNA hydrolase OS=Mannheimia succinicipro... [more]
PTH_MYXXD6.372e-2534.21Peptidyl-tRNA hydrolase OS=Myxococcus xanthus (str... [more]
PTH_EXISA6.372e-2538.65Peptidyl-tRNA hydrolase OS=Exiguobacterium sp. (st... [more]
PTH_CLOPS6.372e-2534.41Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_CLOB86.372e-2536.21Peptidyl-tRNA hydrolase OS=Clostridium beijerincki... [more]
PTH_GEOTN8.322e-2533.70Peptidyl-tRNA hydrolase OS=Geobacillus thermodenit... [more]
PTH_ALKMQ8.322e-2534.05Peptidyl-tRNA hydrolase OS=Alkaliphilus metallired... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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