DY263122

Overview
NameDY263122
Unique NameDY263122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PELE2_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.278e-15
Identity = 59/173 (34.10%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  470 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 895
            RS +S+ S  TI G G + K T   L +K   +VI+ NL           +E G G   + DA+ I   + H+W+D  ++ D                   DG +DI R S  +TVS   F  HDKT+LIG   ++ +     +RVT H+  FD   +R PRVR+  VH YNN
Sbjct:  121 RSQISIPSNTTIIGIGNKGKFTNGSLVVKGVSNVILRNLYIETPVDVAPHYEEGDGWNAEWDAVVID-STDHVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGSLDIKRGSDYVTVSNSRFELHDKTILIGHSDNNGSQDAGKLRVTFHNNLFDRVGERTPRVRFGSVHAYNN 292          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PELA_EMENI (Pectate lyase OS=Emericella nidulans GN=pelA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.976e-15
Identity = 66/195 (33.85%), Postives = 96/195 (49.23%), Query Frame = 2
Query:  341 GGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSL-------RDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY 898
            GG  G    VT LAD     L E      PL I+  VSG+I   + + V+S KTI G      +TG G  ++   +VI+ NL+       + DAI I   S ++W+D C L       +D  DGL+DI+  +  ITVS  +F  H K  LIG   ++  +    + VT  + ++     R P +R+A VH+ NNY
Sbjct:   49 GGAAGDTVTVTNLAD-----LTEAAESDGPLTII--VSGSISGSAKIRVASDKTIFGESGS-SITGIGFYIRRVSNVIMRNLKISKVDADNGDAIGIDASS-NVWVDHCDLSGDLSGGKDDLDGLVDISHGAEWITVSNTYFHDHWKGSLIGHSDNNEDEDLGHLHVTYANNYWYNVYSRTPLIRFATVHIINNY 234          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PELE1_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.290e-14
Identity = 57/173 (32.95%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  470 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 895
            RS +S+ S  TI G G   K T   L +K  ++VI+ NL           +E G G   + DA  I   S ++W+D  ++ D                   DG +DI + S  +T+S   F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+  +H YNN
Sbjct:  103 RSQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 274          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PELD_ERWCH (Pectate lyase D OS=Erwinia chrysanthemi GN=pelD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.612e-14
Identity = 58/173 (33.53%), Postives = 80/173 (46.24%), Query Frame = 2
Query:  470 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNL----------EFEGGKG--PDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC--IRVTIHHCFFDGTRQRHPRVRYAKVHLYNN 895
            RS +SV S  TI G G   K T   L +K   +VI+ NL           +E G G   + DA  I   S  +W+D  ++ D                   DG +DI + S  +T+S   F  HDKT+LIG   S+ +     +RVT H+  FD   +R PRVR+  +H YNN
Sbjct:  109 RSQISVPSNTTIIGIGSNGKFTNGSLVIKGVSNVILRNLYIETPVDVAPHYEEGDGWNAEWDAAVID-NSTRVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGALDIKKGSDYVTISSSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERTPRVRFGSIHAYNN 280          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.638e-13
Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  470 RSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY 898
            R  + + +  TI G G   K+ G   ++K  ++VII N+EF+                G      D I I   + HIWID C+  D                 + DG  D +  +  IT+S  ++  HDK+ + G+  S  +D   +++T+HH  +    QR PRVR+ +VH+YNNY
Sbjct:  141 RVMVDIPANTTIVGSGTNAKVVGGNFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNY 315          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL_PSEMA (Pectate lyase OS=Pseudomonas marginalis GN=pel PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.960e-12
Identity = 57/222 (25.68%), Postives = 92/222 (41.44%), Query Frame = 2
Query:  335 AIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY 898
            A  G +G +  +T + D   G              V+  +  + +R  L +    TI G G   ++       KE + VII N+  E                G    + D + ++  + ++W+D  +  D                 + DG +D+   +  +T+S   F SH+K  LIG+  S   D   ++VTIH+  F+    R PRVRY +VHLYNNY
Sbjct:   74 ASAGSNGRIIKITGIIDVSEGK-------------VYTKTADMKVRGRLDIPGKTTIVGIGSNAEIREGFFYAKEND-VIIRNITVENPWDPEPIFDKDDGADGNWNSEYDGLTVEG-ANNVWVDHVTFTDGRRTDDQNGTEHERPKQHHDGALDVKNGANFVTISYSVFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRYGQVHLYNNY 280          
BLAST of DY263122 vs. ExPASy Swiss-Prot
Match: PEL_PSEFL (Pectate lyase OS=Pseudomonas fluorescens GN=pel PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.447e-11
Identity = 55/219 (25.11%), Postives = 90/219 (41.10%), Query Frame = 2
Query:  344 GLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFE----------------GGKGPDVDAIQIKPKSKHIWIDRCSLRD-----------------YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRVRYAKVHLYNNY 898
            G +G +  +T + D   G               +  +  + +R  L +    TI G     ++    L  KE + VII N+  E                G    + D + I+  + ++W+D  +  D                 + DG +D+   +  +T+S   F SH+K  LIG+  S   D   ++VTIH+  F+    R PRVR+ +VHLYNNY
Sbjct:   77 GANGRIIKITGIIDISEGK-------------AYTTTADMKVRGRLDIPGKTTIVGTTSNAEIREGFLYAKEND-VIIRNITIENPWDPEPKWDPTDGSAGNWNSEYDGLTIEG-ANNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGALDVKNGANYVTISYSAFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRFGQVHLYNNY 280          
The following BLAST results are available for this feature:
BLAST of DY263122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PELE2_ERWCH2.278e-1534.10Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PELA_EMENI2.976e-1533.85Pectate lyase OS=Emericella nidulans GN=pelA PE=2 ... [more]
PELE1_ERWCH3.290e-1432.95Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PELD_ERWCH5.612e-1433.53Pectate lyase D OS=Erwinia chrysanthemi GN=pelD PE... [more]
PEL_BACSU3.638e-1329.38Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]
PEL_PSEMA8.960e-1225.68Pectate lyase OS=Pseudomonas marginalis GN=pel PE=... [more]
PEL_PSEFL4.447e-1125.11Pectate lyase OS=Pseudomonas fluorescens GN=pel PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DE04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263122 ID=DY263122; Name=DY263122; organism=Citrus clementina; type=EST; length=1332bp
CGTTTTTTGAACGCTTCAAATGGAACAGAGAAACAACTGTAACGAACGTT
GATTAAATTTAGCTCGAAGCTATCGTTTCAGTAACTCTCATCCATTAATA
TCAATGGGAAACTCACACGGGCATCATCATCATCACCGTAACGAAGCTAA
CAGTTACTTCCCACACCAAACGCCTACTCCTACCCCTCCGCCCTTTAAAT
TTGGCCCGTCTGATCATCATCAACATCAACCTGCAGCACAATTTCAGAAC
AACTCGACGATGTCATTGCCTTACGCTCACGTTGATTGCAGCTTACGTGC
TCTCGCCGGCCAGGCCGAAGGGTTCGGTCGCCTCGCCATTGGCGGTCTCC
ACGGACCCCTCTACCACGTCACCACTTTAGCTGATGACGGGCCAGGATCA
CTTCGAGAAGGATGCCGCATGAAAGAACCTCTTTGGATTGTCTTTGAAGT
GTCAGGCACCATTCATCTCCGCTCTCACTTGAGTGTCTCATCTTACAAAA
CCATAGATGGCCGAGGACAAAGGGTGAAACTTACAGGAAAGGGTTTGAGG
CTGAAGGAATGCGAACATGTTATAATATGCAATCTAGAGTTTGAAGGTGG
TAAAGGACCTGATGTTGATGCCATTCAAATAAAACCTAAGTCAAAACACA
TATGGATAGACCGTTGTAGTCTCCGTGATTATGATGATGGGCTGATAGAT
ATCACCAGAGAAAGCACAGATATTACAGTTTCTAGGTGTCACTTTTCATC
ACATGACAAGACCATGCTCATTGGAGCAGATCCCTCTCATGTTGCTGATA
GATGTATTCGAGTGACCATTCATCATTGTTTTTTTGATGGGACTCGACAA
CGACATCCACGTGTTAGATATGCTAAAGTACATCTGTATAACAATTACAC
CAGAAAATTGGGGATTTATGCTGTTTGTGCCAGTGTTGATCACAGATATA
CTCCCAATGTAATATATATGAAGCAAGACAGAGGAGATGGCAATCANGTA
TCCTACAAAGAAGCATCAAACAGGGAGGAGGCAGATCGGGTGCTAAAGTC
TGGAGGGGAATTTGTCATACTGGAACCCAGCTGGGTTGAAGACGGAAGCG
GGGGAAAAACCAGGTTTCCCCCCAGGAAAAAAACCCCATTTGGAAGGGTG
CTGGTCCTTACCAAAAATTCAAAAAGGGTTTTCTCCCTTTTAAAGGGAGG
GGCGAAAAATTTCCCCCCCCACAAAAAAAAAACCAAAAAACTGCGCCAAA
AAAAACCCAAAAAAAAAAATTGTTTTTTAAATTTCCAAAAAATTATGCTT
TTTAAACAGGGGTGTTAATATATTTTTTCTCC
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