DY263170

Overview
NameDY263170
Unique NameDY263170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1317
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT07_SOLTU (Patatin-07 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.171e-12
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN  +S        R+ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + ++   C +T+A P+ F
Sbjct:   31 VLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFN--YSGSIF--GPRYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYF 194          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PATB2_SOLTU (Patatin-B2 OS=Solanum tuberosum GN=PATB2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN  +S   L     + GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   31 VLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFN--YSGSIL--GPMYDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYF 194          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT13_SOLTU (Patatin-13 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 45/174 (25.86%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMD-KVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLS+D            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +    +    +FN+  S G      +F G   D K L ++     G+   +      + +  FD+ ++ P +F++++ ++SP  + ++   C +T+A P+ F
Sbjct:   31 VLSVDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNS--STG------QFFGPKYDGKYLMQVPQEKLGET-RVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYF 195          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PT2K3_SOLTU (Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.821e-12
Identity = 44/173 (25.43%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN+  S         + GK   +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P+ F
Sbjct:   31 VLSIDGGGIKGIIPATILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFNSSGSI----FGPMYDGKYFLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYF 194          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PT2K2_SOLTU (Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.821e-12
Identity = 45/174 (25.86%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFN-AGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN +G   G +     + GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   31 VLSIDGGGIKGIIPAVILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIIPFYFEHGPHIFNYSGSIFGPM-----YDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPMYF 194          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PATM3_SOLTU (Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.821e-12
Identity = 44/173 (25.43%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN  +S   +     + GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   31 VLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYLEHGPHIFN--YSGSII--GPMYDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYF 194          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT11_SOLTU (Patatin-11 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.821e-12
Identity = 38/153 (24.84%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  482 LEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +    +    +FN+     F     ++ GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   51 LEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF---GPKYDGKYLMQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYF 195          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PT2K1_SOLTU (Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.152e-11
Identity = 45/173 (26.01%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN   S+G +     + GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   19 VLSIDGGGIKGIIPATILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFN---SSGTIFGP-MYDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYF 182          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PATM1_SOLTU (Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.152e-11
Identity = 44/173 (25.43%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN  +S   +     + GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   31 VLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFN--YSGSII--GPMYDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYF 194          
BLAST of DY263170 vs. ExPASy Swiss-Prot
Match: PAT14_SOLTU (Patatin-14 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.152e-11
Identity = 44/173 (25.43%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  422 VLSIDXXXXXXXXXXXXLIHLEDQIRLKTGDPHAQIADFFDIIAGTGIGALLASMLVADDGSGRPLFTARDALDLITRRNSELFNAGFSAGFLRRKRRFSGKSMDKVLKEIFMRDDGKVLTLKDTCKPLLVPCFDLNSSAPFVFSRADASESPSFNFELWKACRATSATPSMF 940
            VLSID            L  LE Q++    +  A++AD+FD+I GT  G LL +M+   + + RP   A+D +         +FN  +S   +     + GK + +VL+E           +      + +  FD+ ++ P +F++++ ++SP  + +++  C +T+A P  F
Sbjct:   31 VLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIFN--YSGSII--GPMYDGKYLLQVLQEKLGE-----TRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYF 194          
The following BLAST results are available for this feature:
BLAST of DY263170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PAT07_SOLTU5.171e-1226.01Patatin-07 OS=Solanum tuberosum PE=2 SV=1[more]
PATB2_SOLTU6.754e-1226.01Patatin-B2 OS=Solanum tuberosum GN=PATB2 PE=1 SV=1[more]
PAT13_SOLTU6.754e-1225.86Patatin-13 OS=Solanum tuberosum PE=2 SV=1[more]
PT2K3_SOLTU8.821e-1225.43Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 ... [more]
PT2K2_SOLTU8.821e-1225.86Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 ... [more]
PATM3_SOLTU8.821e-1225.43Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT11_SOLTU8.821e-1224.84Patatin-11 OS=Solanum tuberosum PE=2 SV=1[more]
PT2K1_SOLTU1.152e-1126.01Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 ... [more]
PATM1_SOLTU1.152e-1125.43Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1[more]
PAT14_SOLTU1.152e-1125.43Patatin-14 OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA11AA06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263170 ID=DY263170; Name=DY263170; organism=Citrus clementina; type=EST; length=1317bp
CAGGGACACGCCACTCACTCCCGGTCTTAACTCTTCAACAACTCATAGAC
TAAAAGAGAGAGAAGCAAGGCAGCAGGCAACAGCAACACACAAACAACTC
TCACTCACGCTCCACTTTCACCACTAACTAAGGCCACAGAGGTTTAGAAA
GAGAGAAAGTGATAGATTGAGATTGGACATTGGAGAGAGAGCTAGCTAGC
GTACTGCCTTCTTCTTCAGCTATTTAATGCTCATCATCAACAAACCGTGA
AGCCTCGCTCCCGCTTTCTTTTTCTTCACGGACTCATCAAAACCCTTCAG
TTCACTCCTCTAGCTACCAACAATTTAACTATCAATGGACTTGAGTAAGG
TAACCCTGGAGATCTTCAACAAGCTCGAGCAAAAATGGCTTGCACATTGC
GAACCTACCAAGAGAACTCGAGTCCTCAGCATCGACGGCGGAGGCACCAC
CGGCATTGTAGCTGGCGCTGCTCTTATCCACCTCGAGGACCAGATCCGTC
TCAAAACCGGCGATCCTCATGCTCAAATCGCCGATTTCTTCGACATCATT
GCCGGCACCGGCATTGGTGCCCTCCTCGCCTCCATGCTCGTTGCTGATGA
CGGCTCCGGCCGTCCTCTCTTCACTGCCAGGGACGCCCTCGATTTAATCA
CTCGTAGGAACTCCGAACTATTCAACGCTGGGTTCTCTGCAGGATTTCTC
CGCCGCAAACGTAGATTCTCCGGCAAGAGCATGGATAAGGTGTTGAAAGA
AATTTTCATGAGAGATGACGGTAAGGTCCTGACTCTGAAGGACACGTGTA
AGCCCCTGCTTGTTCCTTGCTTTGACTTGAACAGCTCAGCTCCGTTTGTC
TTCTCTCGAGCGGATGCATCCGAGTCACCTAGCTTTAACTTCGAGCTCTG
GAAAGCATGTCGCGCCACGTCAGCTACGCCCAGCATGTTCAAGCAATTCG
CTTTGACCTCCGTTGACGGCAAGACCAGTTGCACGCCGTTGACGGGTGGT
CTAGTCATGAACAACCCAACAGCAGCACCGGGTACTCATGTGCTGCAAAA
CCAGCGCGAATTTCCCGTCGGGTAAACGGCGCCAAGGAACTTCCAATTCT
GTCCCCGGGGAAAGGGCCCTTAAATCCAGGGAAGGGGGGCCCGGGGGAAA
AAAAAACCCCCTAATAAAACGGGGAAAGGGCCCCCCCCTCTCCTGTATTT
TGAAAATGGGGGCTTTGGGGGGAGCCCCACAAAAAAACAATGTAACCACA
AAAATTTGGGGGGAAAAACAAACTCTCCGGCGGGGGAACAAACCGGGGGC
GCGAAAAACACCCCAAT
back to top