DY263190

Overview
NameDY263190
Unique NameDY263190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: NUBP2_DROAN (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila ananassae GN=GF10354 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.056e-34
Identity = 78/170 (45.88%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  618 VKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATEIKGXXXXXXXXXXXXXXXRKK*IFGRKVGI 1121
            VK+ I+VLSGKGGVGKST S QL+ AL     +VGLLDID+CGPS+P +LGLEG DI Q + GW P+Y + +  L VMSIGF+L N  + VIW+G  +    ++F        +D+L+ D PPGTSDEHI ++  L+     G               RK+  F +K GI
Sbjct:    5 VKNVIVVLSGKGGVGKSTVSTQLALALRQTGHKVGLLDIDLCGPSVPYLLGLEGSDIFQCDEGWVPIYTDESQTLAVMSIGFLLKNRTDPVIWRGPKKTMMIRQFLTDVKWDELDYLIIDTPPGTSDEHITVMECLREVPCNGAIIVTTPQGVALDDVRKEITFCKKTGI 174          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: NUBP2_DROWI (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila willistoni GN=GK12055 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.507e-34
Identity = 77/170 (45.29%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  618 VKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATEIKGXXXXXXXXXXXXXXXRKK*IFGRKVGI 1121
            VK+ I+VLSGKGGVGKST S QL+ AL     +VGLLDID+CGPS+P +LGLEG DI+Q + GW P+Y + +  L VMSIGF+L +  + VIW+G  +    ++F +      +D+L+ D PPGTSDEHI ++  L+     G               RK+  F +K GI
Sbjct:    5 VKNVIVVLSGKGGVGKSTVSTQLALALRHTGHKVGLLDIDLCGPSVPYLLGLEGSDIYQCDDGWVPIYTDESKTLAVMSIGFLLKSRTDPVIWRGPKKTMMIKQFLQDVKWDELDYLIIDTPPGTSDEHITVMECLREVPCNGAIIVTTPQGVALDDVRKEITFCKKTGI 174          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: CFD1_CRYNE (Cytosolic Fe-S cluster assembly factor CFD1 OS=Cryptococcus neoformans GN=CFD1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.690e-34
Identity = 72/146 (49.32%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  597 IAERMATVKHKILVLSGKGGVGKSTFSAQLSYALAAMD--FQVGLLDIDICGPSIPKMLGLEGQD--IHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHI-LIVH 1013
            ++ R++TVK+ I+VLSGKGGVGKS+ S QL+ +L A     +VGL+D+DI GPS+P+M+GL+     +HQS+ GW PVYV+    LGVMSIGF+L +  ++V+W+G  ++   ++F      G++D+LV D PPGTSDEHI L+ H
Sbjct:    9 VSRRLSTVKNIIIVLSGKGGVGKSSSSVQLALSLLAQSPTNRVGLIDLDITGPSLPRMVGLDTPTATVHQSSAGWVPVYVDQGRRLGVMSIGFLLKDRGDSVVWRGPKKDGMIRQFLSEVRWGDLDYLVIDTPPGTSDEHISLLTH 154          

HSP 2 Score: 29.6462 bits (65), Expect = 5.690e-34
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 2
Query:  995 THPHCPFPPGYGNKG---AIIGTTPATVSLNDVKKKINFWQKSGNP 1123
            TH H  F P   N     +I+ +TP T +LND  K ++F +K   P
Sbjct:  153 THLHPLFTPTMSNATTPTSILISTPQTTALNDTLKSLSFTRKLSLP 198          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: CFD1_USTMA (Cytosolic Fe-S cluster assembly factor CFD1 OS=Ustilago maydis GN=CFD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.400e-34
Identity = 75/163 (46.01%), Postives = 109/163 (66.87%), Query Frame = 3
Query:  573 GPDPDLVAIAERMATVKHKILVLSGKGGVGKSTFSAQLSYALAAMDF--------QVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATE 1031
            G DP +V    R+++V H ILVLSGKGGVGKS+ SAQL+ +L++           +VG+LDID+ GPSIP+MLGL G  + QS  GW PVY +++  L VMS+GF+L + +++V+W+G  +    ++F      G +D+L+ D PPGTSDEHI I+ +L+  E
Sbjct:   16 GADPKIV---RRLSSVSHIILVLSGKGGVGKSSVSAQLALSLSSSASPSDRSRMARVGILDIDLTGPSIPRMLGLGGASVKQSTDGWVPVYTDASQHLAVMSVGFLLRSKNDSVVWRGPKKNAMIKQFLGDVRWGTLDYLIIDTPPGTSDEHISILEYLRTFE 175          

HSP 2 Score: 24.6386 bits (52), Expect = 7.400e-34
Identity = 11/28 (39.29%), Postives = 18/28 (64.29%), Query Frame = 2
Query: 1040 AIIGTTPATVSLNDVKKKINFWQKSGNP 1123
            A++ TTP  VSL D  + ++F +K+  P
Sbjct:  178 AVMVTTPQAVSLADNLRSLDFCRKTSLP 205          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: NUBP2_DANRE (Cytosolic Fe-S cluster assembly factor nubp2 OS=Danio rerio GN=nubp2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.438e-34
Identity = 66/144 (45.83%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  618 VKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYV---ESNLGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATEIKG 1040
            VKH +LVLSGKGGVGKST + +L+ A      +VG+LD+D+CGPSIP+ML +   ++HQ + GW PVY    +  L +MSI F+L + DEAVIW+G  +     +F      G +D L+ D PPGTSDEH+ ++  L+   + G
Sbjct:   12 VKHVLLVLSGKGGVGKSTITTELALAFRHAGKKVGILDVDLCGPSIPRMLSVGKPEVHQCDSGWVPVYADPQQQQLALMSIAFLLEDSDEAVIWRGPKKTALIGQFVSDVAWGELDILLVDTPPGTSDEHLAVLENLRKHRVDG 155          

HSP 2 Score: 29.6462 bits (65), Expect = 7.438e-34
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 2
Query: 1037 GAIIGTTPATVSLNDVKKKINFWQKS 1114
            GA++ TTP  VS  DV+++I F +K+
Sbjct:  155 GAVLVTTPQAVSTGDVRREITFCKKT 180          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: NUBP2_DROPS (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA18483 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 7.812e-34
Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  618 VKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATEIKGXXXXXXXXXXXXXXXRKK*IFGRKVGI 1121
            VK+ I+VLSGKGGVGKST S QL+ AL     +VGLLDID+CGPS+P +LGLEG +I+Q + GW P+Y +++  L VMSIGF+L N  + VIW+G  +    ++F        +D+L+ D PPGTSDEHI ++  ++     G               RK+  F +K GI
Sbjct:    5 VKNVIIVLSGKGGVGKSTVSTQLALALRHSGHKVGLLDIDLCGPSVPFLLGLEGSNIYQCDEGWVPIYTDASKTLAVMSIGFLLKNRTDPVIWRGPKKTMMIRQFLTDVKWEELDYLIIDTPPGTSDEHITVMECMREVPCNGAIIVTTPQSVALDDVRKEITFCKKTGI 174          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: NUBP2_DROPE (Cytosolic Fe-S cluster assembly factor NUBP2 homolog OS=Drosophila persimilis GN=GL12799 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.812e-34
Identity = 76/170 (44.71%), Postives = 105/170 (61.76%), Query Frame = 3
Query:  618 VKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATEIKGXXXXXXXXXXXXXXXRKK*IFGRKVGI 1121
            VK+ I+VLSGKGGVGKST S QL+ AL     +VGLLDID+CGPS+P +LGLEG +I+Q + GW P+Y +++  L VMSIGF+L N  + VIW+G  +    ++F        +D+L+ D PPGTSDEHI ++  ++     G               RK+  F +K GI
Sbjct:    5 VKNVIIVLSGKGGVGKSTVSTQLALALRHSGHKVGLLDIDLCGPSVPFLLGLEGSNIYQCDEGWVPIYTDASKTLAVMSIGFLLKNRTDPVIWRGPKKTMMIRQFLTDVKWEELDYLIIDTPPGTSDEHITVMECMREVPCNGAIIVTTPQSVALDDVRKEITFCKKTGI 174          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: CFD1_YARLI (Cytosolic Fe-S cluster assembly factor CFD1 OS=Yarrowia lipolytica GN=CFD1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.638e-33
Identity = 74/175 (42.29%), Postives = 112/175 (64.00%), Query Frame = 3
Query:  609 MATVKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVES--NLGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQ-ATEIKGXXXXXXXXXXXXXXXRKK*IFGRKVGIP 1124
            +A VK+ +LVLSGKGGVGKS+ + QL+  LAA   +VG+LDID+ GPSIP+  G+E + ++QS+ GW PVY ++  NL +MS+GF+L +  ++V+W+G  +    ++F +  + G +D+L+ D PPGTSDEHI I   L+   +I G               RK+  F +K+G P
Sbjct:   12 LAGVKNIVLVLSGKGGVGKSSVTTQLALTLAAQGKKVGVLDIDLTGPSIPRFFGMEDKQVYQSSAGWVPVYTDASRNLCLMSLGFLLSSRGDSVVWRGPRKTAMIRQFIRDVVWGELDYLLIDTPPGTSDEHISIAEELRFCDQILGAVIVTTPQGVALADVRKELSFCKKIGFP 186          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: CFD1_SCHJY (Probable cytosolic Fe-S cluster assembly factor SJAG_02895 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_02895 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.031e-32
Identity = 67/150 (44.67%), Postives = 101/150 (67.33%), Query Frame = 3
Query:  597 IAERMATVKHKILVLSGKGGVGKSTFSAQLSYALAAMDF-----QVGLLDIDICGPSIPKMLGLEGQD--IHQSNLGWSPVYVESN--LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFL 1019
            +A+ +  VKH ILVLSGKGGVGKS+ + QL+ +L    F     ++G+LDID+ GPSIP+M G++ +   IHQS+ GW PVY +    +G+MS+ F+L + +++V+W+G  +    ++F      G+ID+L+ D PPGTSDEH+ IV  L
Sbjct:    1 MADSLENVKHIILVLSGKGGVGKSSVTTQLALSLHETPFYSRKLRIGVLDIDLTGPSIPRMFGMDAETHRIHQSSSGWVPVYTDETKEIGLMSLAFLLSSKNDSVVWRGPKKAAMIRQFVSDVNWGDIDYLLIDTPPGTSDEHLTIVESL 150          

HSP 2 Score: 30.8018 bits (68), Expect = 1.031e-32
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 2
Query: 1037 GAIIGTTPATVSLNDVKKKINFWQ 1108
            GA++ TTP  V+  DVKK+INF Q
Sbjct:  163 GAVMVTTPQNVATLDVKKEINFCQ 186          
BLAST of DY263190 vs. ExPASy Swiss-Prot
Match: CFD1_YEAST (Cytosolic Fe-S cluster assembly factor CFD1 OS=Saccharomyces cerevisiae GN=CFD1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.287e-32
Identity = 74/178 (41.57%), Postives = 108/178 (60.67%), Query Frame = 3
Query:  600 AERMATVKHKILVLSGKGGVGKSTFSAQLSYALAAMDFQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN----LGVMSIGFMLPNPDEAVIWKGTSQERANQKFPKGCLLGNIDFLVGDAPPGTSDEHILIVHFLQATEIKGXXXXXXXXXXXXXXXRKK*IFGRKVGI 1121
            A  +A +KH IL+LSGKGGVGKS+ + Q +  L +M F+VG+LDID+ GPS+P+M GLE + I+Q   GW PV VE+N    L V+S+GF+L +   +VIW+G  +    ++F      G +D+L+ D PPGTSDEHI I   L+ ++  G               +K+  F +KV +
Sbjct:   10 AASLAGIKHIILILSGKGGVGKSSVTTQTALTLCSMGFKVGVLDIDLTGPSLPRMFGLENESIYQGPEGWQPVKVETNSTGSLSVISLGFLLGDRGNSVIWRGPKKTSMIKQFISDVAWGELDYLLIDTPPGTSDEHISIAEELRYSKPDGGIVVTTPQSVATADVKKEINFCKKVDL 187          
The following BLAST results are available for this feature:
BLAST of DY263190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
NUBP2_DROAN2.056e-3445.88Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROWI3.507e-3445.29Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
CFD1_CRYNE5.690e-3449.32Cytosolic Fe-S cluster assembly factor CFD1 OS=Cry... [more]
CFD1_USTMA7.400e-3446.01Cytosolic Fe-S cluster assembly factor CFD1 OS=Ust... [more]
NUBP2_DANRE7.438e-3445.83Cytosolic Fe-S cluster assembly factor nubp2 OS=Da... [more]
NUBP2_DROPS7.812e-3444.71Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
NUBP2_DROPE7.812e-3444.71Cytosolic Fe-S cluster assembly factor NUBP2 homol... [more]
CFD1_YARLI8.638e-3342.29Cytosolic Fe-S cluster assembly factor CFD1 OS=Yar... [more]
CFD1_SCHJY1.031e-3244.67Probable cytosolic Fe-S cluster assembly factor SJ... [more]
CFD1_YEAST4.287e-3241.57Cytosolic Fe-S cluster assembly factor CFD1 OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AC06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263190 ID=DY263190; Name=DY263190; organism=Citrus clementina; type=EST; length=1272bp
CAAATTCCCAAAACCTAAAAATCCCTAAATTTATCTCCGCTTCCCCAGCT
GCTCCATCAGCTTCTCACTTCACTCTCCTCCGGCAGCCAACAGCCGACGT
TTATTGCCCCACCCTAACACCGAATTAAGGAGCCACCACCTTCAGCAGCG
ATCCACCGTTCACGCGCGACGCAGCAGAGCCAGCAACCCAGCAGTAGTGC
AGCACCAAACGGGCGACGCAACAGTGACCCACACCCACCAGCACCACCGT
GCGACGTAGCTGCAGCCAATCGAACACGCGCGACGCAGCAGCAGCTATCT
CAGCTCCAACGCGACCTGAACCCAGCAGCACCAGCAGCGCACGCGAACCA
ACAGCAAACCATCACCAACTCCATCCCAACTCTCCTCCTTTGCTTTCATT
CACATACTAAGAAGCAGAAGAACTACTATTATAAGAGAAGCCACCAATGG
AGAATGGAGAAATTCCAGAAAATGCTAATGAACATTGCCCTGGTCCTCAA
TCAGAGTCTGCAGGAAAATCTGATGATTGCCAAGGATGCCCTAATCAAGA
AGCTTGTGCTACCGCCCCAAAAGGCCCTGACCCTGACTTGGTTGCTATTG
CTGAACGAATGGCTACTGTTAAGCATAAGATACTGGTTTTATCGGGTAAG
GGTGGAGTTGGAAAAAGCACATTCTCTGCCCAGCTCTCATATGCACTAGC
GGCTATGGATTTCCAAGTAGGTCTCCTGGACATTGACATTTGTGGCCCCA
GCATCCCAAAGATGCTTGGGCTAGAGGGTCAAGACATTCACCAAAGCAAC
CTTGGGTGGTCTCCTGTCTATGTTGAATCCAACCTTGGGGTAATGTCCAT
TGGCTTCATGCTCCCCAACCCAGATGAAGCTGTCATATGGAAGGGGACCT
CGCAAGAACGGGCTAATCAAAAATTTCCTAAAGGATGTTTATTGGGGAAT
ATCGATTTTCTGGTGGGTGATGCACCACCAGGGACTTCAGATGAACACAT
CCTCATTGTCCATTTCCTCCAGGCTACGGAAATAAAGGGGCCATAATTGG
TACTACTCCCGCAACAGTTTCCCTGAATGATGTTAAGAAAAAAATAAATT
TTTGGCAGAAAAGTGGGAATCCCGGGTTCTGGGGGTCGTTTAAAAAAAGA
AATGGGTTGGGGTTCCTTCTTTTAGTGGGATTTTTAAAATCTTTAGGGGG
AAAATGGGGAAGGGGGTGGAAGAAAATTGAAGGTTCCCCCAAAAAAAAAG
CTTTTAAAAAAAGAGGCGTGGG
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