DY263218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_THISH (Diaminopimelate epimerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dapF PE=3 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 4.689e-37 Identity = 92/271 (33.95%), Postives = 137/271 (50.55%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN--GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLN---LAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRK 1069 + F K HGLGNDF+++D + ++P+Q L R FG+G D V+ + D+ RIFN+DG+E E CGNG RCFA F+ E L K V T AG+I ++Q DG+V VDMG P LK P + + ++ L+V+G + + VSMGNPH V L+VD + +A +GP E H FP N F++++ ++++RV+ER +G ++ V LPG I W G++ Sbjct: 3 IQFSKMHGLGNDFVVIDAIHQPVD-LSPDQVRLLAHRRFGVGCDQVLLVERPSDPAAADFRYRIFNADGNEVEQCGNGARCFAVFVRE-RGLTAKDHIPVETAAGIIHLQVQPDGQVTVDMGPPRLK----PWQIPFEAESAMTSYPLEVEGETYEIGAVSMGNPHAV---------LRVDNVQTAPVARLGPLIEAHPRFPRHVNVGFMQVVSPGEIRLRVYERGVGETLACGTGACAAVVSGRIQGLLDETVAVDLPGGRLVINWAGQE 258
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.124e-37 Identity = 96/269 (35.69%), Postives = 129/269 (47.96%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+L S +P A K + L + SMGNPHCV V N+AEIG H FP N F++++ S +K+RV+ER +G +++ V LPG I WEG P Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLDPSQIP--FKAKKAEKTYL--LQTSQQTFLCGAASMGNPHCVL------DVEDVANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKP 258
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.124e-37 Identity = 96/269 (35.69%), Postives = 129/269 (47.96%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+L S +P A K + L + SMGNPHCV V N+AEIG H FP N F++++ S +K+RV+ER +G +++ V LPG I WEG P Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLDPSQIP--FKAKKAEKTYL--LQTSQQTFLCGAASMGNPHCVL------DVEDVANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKP 258
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.124e-37 Identity = 97/269 (36.06%), Postives = 129/269 (47.96%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+L S +P A K + L + SMGNPHCV V N+AEIG H FP N F++++ S +K+RV+ER +G +++ V LPG I WEG P Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLDPSQIP--FKAKKAEKTYL--LQTPQQTFLCGAASMGNPHCVL------DVEDVANANVAEIGALLTKHERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDLPGGTLTINWEGEGKP 258
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_HAEIG (Diaminopimelate epimerase OS=Haemophilus influenzae (strain PittGG) GN=dapF PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.124e-37 Identity = 97/269 (36.06%), Postives = 135/269 (50.19%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD TPE +L +R+ GIG D ++ P D+ RIFN+DGSE CGNG RCFARF+ L+ L K+ +V T G +V ++DD +++V+MGEPI + + +P +ANK + D+ V VSMGNPHCV Q + N+ ++GP E H FP R N F++II +K+RV+ER +G V L G IEW G +P Sbjct: 1 MQFSKMHGLGNDFVVVDGVTQNV-FFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIP--FTANKFEKNYILRTDIQTVLCG--AVSMGNPHCVV------QVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLSGGSLMIEWNGVGHP 257
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_BURP6 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 668) GN=dapF PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.124e-37 Identity = 94/272 (34.56%), Postives = 133/272 (48.90%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVP---TSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTF-GTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKN 1072 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ P V+G D+ RIFN DG E E CGNG RCF +F+ + L GK S V G+I +QD+G+V VDMG P+ + + VP + L ++ + L V+GV ++ VSMGNPH V E ++VD GP E FP R N F++++ ++ +RV+ER G + V G I W G ++ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTGKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDASGLDGRREGADTLWPLPVNGVTRWISVVSMGNPHAVQIVDDAEAFAVRVD-------GPAIERDPRFPQRVNAGFMQVVSRHEVNLRVYERGAGETLACGTGACAAVAAGIRRGRLDSPVTVHTHGGTLTISWNGARD 266
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_ALCBS (Diaminopimelate epimerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dapF PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.124e-37 Identity = 81/224 (36.16%), Postives = 117/224 (52.23%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWER 931 L F K HGLGNDF+++D + P + ++ +L DR FG+G D ++ P D+ RI N+DGSE CGNG RCFARF+ E + L K+S V T AG + + DD ++ VDMG P +P + A D + S W+V V +GNPHC VD + +GP E H FP R N F++I+ +++++RV+ER Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVETAAGQMTLSVTDDDQITVDMGAPRWAPDAIPMTAKAEADNYFLVSGTQA----WDVGAVGLGNPHCTLLVE------NVDTAPVDTVGPLLESHEQFPERANVGFMQIVSRNEIRLRVYER 215
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.998e-37 Identity = 95/269 (35.32%), Postives = 130/269 (48.33%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+L+ S +P A K + L + SMGNPHCV V N+AEIG H FP N F++++ + +K+RV+ER +G +++ V LPG I WEG P Sbjct: 2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPVLEPSQIP--FKAKKAEKTYL--LQTPQQTFLCGAASMGNPHCVL------DVEDVANANVAEIGALLTKHERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQVDLPGGSLTINWEGEGKP 258
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.998e-37 Identity = 93/269 (34.57%), Postives = 132/269 (49.07%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PIL+ S +P + ++++ + + SMGNPHCV V ++AEIG H FP N F++++ S +K+RV+ER +G ++ V LPG I WEG P Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSQIPFKAKKPEKTYLLQTPMQT----FLCGAASMGNPHCVL------DVEDVASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKP 258
BLAST of DY263218 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.998e-37 Identity = 93/269 (34.57%), Postives = 132/269 (49.07%), Query Frame = 2 Query: 272 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTSLSANKDQSVVKSELDVDGVKWNVTCVSMGNPHCVTFGTKEGQNLKVDKLNLAEIGPKFEHHSVFPARTNTEFVEIIFSSQLKMRVWERXXXXXXXXXXXXXXXXXXXXPEGHAEKKCPVGLPGRPWEIEWEGRKNP 1075 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PIL+ S +P + ++++ + + SMGNPHCV V ++AEIG H FP N F++++ S +K+RV+ER +G ++ V LPG I WEG P Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPILEPSQIPFKAKKPEKTYLLQTPMQT----FLCGAASMGNPHCVL------DVEDVASASVAEIGAMLTKHERFPRGVNVGFMQVVDSGHIKLRVYERGAAETLACGTGACAAVVVGQVQGKLGQQVRVDLPGGTLTINWEGEGKP 258 The following BLAST results are available for this feature:
BLAST of DY263218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 409
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY263218 ID=DY263218; Name=DY263218; organism=Citrus clementina; type=EST; length=1326bpback to top |