DY263228

Overview
NameDY263228
Unique NameDY263228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1041
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.983e-13
Identity = 52/162 (32.10%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIE 719
            ++ +ER RR+KLN+R +ALR+VVPN+SKMDKAS++ DAI YI EL  +  +   E +++++           E+    L   K         S+ S   PV  +E+ VK +G   + + V  SKR     +L  A   L+L++  A+++ V   +++ A ++
Sbjct:  453 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKN---------QLEEVKLELAGRKASASGGDMSSSCSSIKPVG-MEIEVKIIGWDAM-IRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVK 603          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH093_ARATH (Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.590e-13
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKS---KKNFG--FDFEQELPVLLRPKKKKIDR 500
            KN+++ER RRK+LN+RL  LRS+VP ISKMD+ SI+ DAIDY++EL ++  +++DE  EL +  +    K FG   D     P++    K +IDR
Sbjct:  178 KNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDLKDLNANEPLVRNSPKFEIDR 272          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.418e-13
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKN 434
            ++ +ER RR+KLN+R +ALRSVVPNISKMDKAS++ DAI YI+EL E+ K + DE +  +   S+ N
Sbjct:  396 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESN 462          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: DYT1_ARATH (Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.421e-11
Identity = 52/166 (31.33%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILE-LRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADE 728
            N+ +ER RR+KL+ RL ALRS VP ++ M KASI++DAI YI EL    K + +   E+E    +     D EQ  P +++P+ +  D            + I E +++  +GE+   + +   KR     K  E    L  +II  ++T   G +L +A ++  E
Sbjct:   33 NLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFHEMEEAPPE----IDEEQTDP-MIKPEVETSD-----LNEEMKKLGIEENVQLCKIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISASVQTQE 188          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.856e-11
Identity = 51/178 (28.65%), Postives = 94/178 (52.81%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDE--IMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEA-----DEEEMDDL 746
            ++ +ER RR+KLN R +ALR+VVPN+SKMDK S+++DA+ YI EL  + + +  E   +E++  + K+  G      +P + + ++K                E++++ VK M     +V V   K      +L  A   L+L++  A+I+ +   +++ A ++       +EE+ DL
Sbjct:  344 HVEAERMRREKLNHRFYALRAVVPNVSKMDKTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAG--QRNAIPSVCKYEEK--------------ASEMMKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKMGLRIYKQEELRDL 505          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH061_ARATH (Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.424e-11
Identity = 32/62 (51.61%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 416
            KN+++ER RRK+LN+RL  LRS+VP I+KMD+ SI+ DAIDY++EL ++  +++++  EL S
Sbjct:  151 KNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGS 212          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.400e-11
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEIL-ELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANI 677
            +I++ER RR+KL +R  AL +++P + KMDKAS++ DAI +I+ L E  K       E E  K +K        +   L+  +  +      S G+R +    L E+ V+  G+ +L + + C K+   ++K+    E L L I  +N+
Sbjct:  127 HILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIKYLQESVK-------EYEEQKKEKTMESVVLVKKSSLVLDENHQPSSSSSSDGNRNSSSSNLPEIEVRVSGKDVL-IKILCEKQKGNVIKIMGEIEKLGLSITNSNV 267          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.053e-11
Identity = 50/173 (28.90%), Postives = 86/173 (49.71%), Query Frame = 3
Query:  234 NIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKID----RFFDSAGSRTAPVEILELRVKTMGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEADEEEMD 740
            +I++ER RR+KL +R  AL ++VP + KMDKAS++ DA+ +I+ L E+       + ELE  K ++        E  VL++  K  +D     F  S     + +++ E+ V+   E +L + + C K+   + K+    E L + +IT +     G  L    I   E + D
Sbjct:  153 HIIAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQER-------VGELEEQKKERRL------ESMVLVKKSKLILDDNNQSFSSSCEDGFSDLDLPEIEVRFSDEDVL-IKILCEKQKGHLAKIMAEIEKLHI-LITNSSVLNFGPTLDITIIAKKESDFD 310          
BLAST of DY263228 vs. ExPASy Swiss-Prot
Match: BH020_ARATH (Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.211e-11
Identity = 38/154 (24.68%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  231 KNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGKSKKNFGFDFEQELPVLLRPKKKKIDRFFDSAGSRTAPVEILELRVKTM-------GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITA 671
            +++++ER RR+KLNERL AL +++P + K DKA++++DAI ++++L E+ K++ +E +  +    K +      +   V L            +A   ++  + + +  +TM        ++ L++ V C K    M+K+  + E  +L+++ +
Sbjct:  132 EHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAIKHLKQLQERVKKLEEERVVTK----KMDQSIILVKRSQVYLDDDSSSYSSTCSAASPLSSSSDEVSIFKQTMPMIEARVSDRDLLIRVHCEKNKGCMIKILSSLEKFRLEVVNS 281          
The following BLAST results are available for this feature:
BLAST of DY263228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RAP1_ARATH1.983e-1332.10Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH093_ARATH2.590e-1345.26Transcription factor bHLH93 OS=Arabidopsis thalian... [more]
AIB_ARATH4.418e-1355.22Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
DYT1_ARATH1.421e-1131.33Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Ar... [more]
BH028_ARATH1.856e-1128.65Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
BH061_ARATH2.424e-1151.61Transcription factor bHLH61 OS=Arabidopsis thalian... [more]
BH018_ARATH5.400e-1130.20Transcription factor bHLH18 OS=Arabidopsis thalian... [more]
BH025_ARATH7.053e-1128.90Transcription factor bHLH25 OS=Arabidopsis thalian... [more]
BH020_ARATH9.211e-1124.68Transcription factor NAI1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263228 ID=DY263228; Name=DY263228; organism=Citrus clementina; type=EST; length=1041bp
CTCAATCTACTTTTATTTGATTTCTTCTCAAGAAAGAAGAATCCTTCTAT
TTTTTTTGTTTTGGTGTGATGGAAAACCTCGGCGAAGACTACCAGCAAGA
GTATCAAAATTACTGGGAAACCAAAATGTTCCTCCAAAATGAAGAATTTG
ACACATGGCCATTGGACGAGGCGTTTTCGGGGTACTATGACTCGAGTTCT
CCGGACGGGGCGGCGTCGTCGGCGGCGTCCAAGAATATTGTCTCGGAGAG
GAATAGGAGAAAGAAGCTCAACGAAAGGCTGTTTGCTCTTAGATCAGTTG
TCCCCAATATTAGCAAGATGGATAAAGCATCAATAATCAAAGATGCTATC
GATTACATACAAGAGCTGCACGAGCAAGAGAAGAGGATTCGAGATGAAAT
AATGGAACTCGAGTCTGGGAAATCGAAGAAGAATTTTGGGTTTGATTTCG
AGCAGGAGCTGCCTGTTTTGTTGAGACCAAAGAAGAAGAAAATTGACCGG
TTCTTTGATTCGGCAGGATCAAGAACTGCTCCTGTTGAAATCCTTGAACT
TCGGGTAAAAACAATGGGAGAAAAGATATTGGTGGTGAGCGTAACTTGTA
GCAAAAGAACAGATACAATGGTTAAATTGTGTGAGGCCTTTGAATCTTTA
AAGCTAAAAATCATCACCGCAAATATCACCGCTGTTGCTGGCAGGCTTTT
GAAGACAGCCTTTATTGAGGCTGATGAAGAGGAGATGGACGATTTGAAGA
TTAAAATTCAAACAGCAATTCAAGCTCTCAATGATCCATCAAGTCCCATG
AGCGTCTAATGTCACAAGCTCCAACAACTTCAAATCGGTGATGGTGTGAG
TTTTTGGATGGCATGTTTTGATATGCTTTTATCACCACTCACTCACCATA
GCCTGCTTATTTTTCTCATTTTTATGCTTAATGAAGATACGACGTTTCTG
GCCCCCCCCCCCCCCCCCCCCCCCTTGGCTTTCCTGGTCCAAAAGGTTAA
TTCTTCATAAACAAAAATGGAAAGGGCTCAGTAATTCTACT
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