DY263270

Overview
NameDY263270
Unique NameDY263270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1236
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263270 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.110e-38
Identity = 92/243 (37.86%), Postives = 135/243 (55.56%), Query Frame = 2 
Query:  128 FSRTSSFRDEVEDEEALRWAALERLPTYARA------RRGIFKNVVGD------VKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRENSGFCRTVSRC 820
            F+R S+     +DEE LRWAA+ RLP+  +       RR   +           V+ +DV +L   ++ +++ + +   + D  +    +++R + V +E+PKIEVRF+NL +E+ V  G+RALPT+ N   +  E  L  LRI +  + KL IL D+SGII+P R+TLLLGPP SGK               + +G ITYNG    +F   RTSAY+SQ D  +AE+TVRE   F    +RC
Sbjct:   22 FARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDF---AARC 261

HSP 2 Score: 24.6386 bits (52), Expect = 6.110e-38
Identity = 8/22 (36.36%), Postives = 16/22 (72.73%), Query Frame = 1 
Query:  928 GKKTILVVKYIMKILGLEPCAE 993
            G+K  +   Y++K+LGL+ C++
Sbjct:  301 GEKHSVSTDYVLKVLGLDVCSD 322
The following BLAST results are available for this feature:
BLAST of DY263270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB31G_ARATH6.110e-3837.86ABC transporter G family member 31 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11BB11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263270 ID=DY263270; Name=DY263270; organism=Citrus clementina; type=EST; length=1236bp
ATCATTTGTGATCTTACTTTTAAATAACATCATTACAGCTTCTTTCTCTC
TCTCTCTCTCTCTTTTCTCTGTGGCTTTGTTTTGTGATAATTAATTAGAT
CGGATGTGGAACTCGGCGGAGAATGTGTTTTCTAGAACGTCGTCGTTTAG
GGACGAGGTAGAGGACGAGGAGGCGTTAAGGTGGGCGGCGCTTGAGCGGC
TGCCGACTTACGCTCGAGCTCGCCGTGGCATTTTCAAGAACGTGGTCGGT
GACGTTAAGGAGGTCGATGTGAGTGAGCTGGCGGTTCAGGAACAGAGGCT
TGTGTTGGACCGGTTGGTGAATGCTGTTGAAGATGATCCGGAGCGCTTCT
TTGATCGCATGAGAAAGAGATGCGAAGCAGTTGATTTGGAGCTTCCAAAG
ATTGAGGTTCGATTTCAGAATCTGACAGTTGAATCTTTTGTTCACCTTGG
AAGTAGAGCGCTACCAACCATTCCCAATTTTATTTTTAACATGACTGAGG
CTCTTTTGAGGCAATTGCGGATATATCGGGGAAACAGGAGCAAATTGACA
ATTTTGGATGACTTAAGCGGGATTATTAGACCTTCCAGATTGACCCTGTT
GCTGGGTCCTCCGAGCTCAGGAAAGACTACACTATTGCTAGCTCTTGCTG
GGCGCCTCGGACATCATTTACAGGTGTCAGGGAAAATTACATACAATGGA
CACGGGTTTAAAGAGTTTGTTCCTCCAAGGACGTCCGCTTATGTCAGTCA
ACAGGATTGGCAAGTGGCAGAGATGACAGTACGGGAAAACTCTGGATTTT
GCAGGACGGTGTCAAGGTGTTGGATCCAAATATGATATGATTACGGAACT
TGCAAGAAGAGAAAAAATAACTGGGATAAAACCTGATGAAAATCTTGATT
TTTTTATGAAAGTCTTTGCCCTGGGGGGGCAAAAAAACTATCCTTGTGGT
GAAGTACATCATGAAAATTCTAGGTTTGGAACCTTGTGCTGAACACATTG
GTAAGGAAATAAAAAGCTTAAAGGAATCTTGGGAGGCCAAAAAAAACGCG
CTGAAAAAAAGGGTGAATTATTTATTTGGGCCCGCCCAAAATACTTTTTC
CGGGAAAAAAAATACAAAGTGGCCCTTGAAAAGTTCAACTACCTTTTTAA
AATCATCAAAAAATCTAAAAAACTTTCTCCCCCCGGCCCTTTTTAGGGGG
AACCCCTGGTTTTTTTTTTTCCTCTTTCTCACCCCG
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