DY263284

Overview
NameDY263284
Unique NameDY263284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_STAHJ (Undecaprenyl pyrophosphate synthetase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=uppS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.555e-19
Identity = 38/116 (32.76%), Postives = 69/116 (59.48%), Query Frame = 3 
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVLITHS 869
            W + + EV ++M L    +K+ L   I + ++I  IG    +P++  E +  A+++TKNN+  +LI A++Y G+ ++VQ+ KSI  +++ +     DIDES+I +      L+THS
Sbjct:   82 WSRPENEVNYIMNLPVNFLKTFLPELIEKNVQIETIGFLDAVPKSTIEAIEHAKEKTKNNTGLKLIFAINYGGRAEIVQSMKSIYDELQRNGQDSKDIDESMINKH-----LMTHS 192

HSP 2 Score: 46.9802 bits (110), Expect = 1.555e-19
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:  860 YPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LH-FQQRKEGAM 1042
            YP PELLIRTSGE R SNFL+WQ +Y+  F+  + L  D    E    L ++  +QR+ G +
Sbjct:  193 YPDPELLIRTSGEQRISNFLIWQSSYSE-FIFNEKLWPDFDGEEFKNCLKIYQSRQRRFGGL 253
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_SALTY (Undecaprenyl pyrophosphate synthetase OS=Salmonella typhimurium GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.555e-19
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W +   EV  LM+LF  ++ SE++      +R+ +IGD SR    LQE +R +E  T +N+   L +A +Y G++D+VQ  + +A++V+  V+R D IDE  + Q++
Sbjct:   74 WNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAEQVQAGVLRPDQIDEERLGQQI 180

HSP 2 Score: 40.817 bits (94), Expect = 1.555e-19
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:  872 ELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAE 991
            +L+IRT GE R SNFLLWQ+AY  ++  TD L  D  + +
Sbjct:  189 DLVIRTGGEHRISNFLLWQIAYAELYF-TDVLWPDFDEQD 227
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_SALPA (Undecaprenyl pyrophosphate synthetase OS=Salmonella paratyphi A GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.555e-19
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W +   EV  LM+LF  ++ SE++      +R+ +IGD SR    LQE +R +E  T +N+   L +A +Y G++D+VQ  + +A++V+  V+R D IDE  + Q++
Sbjct:   74 WNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAEQVQAGVLRPDQIDEERLGQQI 180

HSP 2 Score: 40.817 bits (94), Expect = 1.555e-19
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:  872 ELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAE 991
            +L+IRT GE R SNFLLWQ+AY  ++  TD L  D  + +
Sbjct:  189 DLVIRTGGEHRISNFLLWQIAYAELYF-TDVLWPDFDEQD 227
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_BUCAP (Undecaprenyl pyrophosphate synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=uppS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.556e-19
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 3 
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVLI 860
            W + ++E+  LMKLF  ++KSE++      IR+ +IGD+S     L+  +   E +T NN+   L +A +YSG++D+++  K I + V+ DV+ +D I E    Q L  + L+
Sbjct:   75 WRRPKLEITALMKLFFFALKSEIKNLNKYNIRLKIIGDTSPFNENLKNYIHKVEKQTFNNTGLILNIAANYSGRWDIIRGIKKIIKDVQKDVLDIDQIQERNFSQYLSTSELL 187

HSP 2 Score: 40.817 bits (94), Expect = 1.556e-19
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 2 
Query:  872 ELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLD 976
            +L+IRT GE R SNFLLWQ+AY+ ++  TD L  D
Sbjct:  190 DLVIRTGGEKRISNFLLWQIAYSELYF-TDILWPD 223
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_PROMM (Undecaprenyl pyrophosphate synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=uppS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.628e-19
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 3 
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVLIT 863
            W +   EV FLM LFE+ ++ ELE    E +RI  +GD   LP  LQEL+ +A + T  N+     V  +Y G+ ++V A + +AQ+         D+D +LI++    A L+T
Sbjct:   84 WSRPGDEVNFLMTLFERVLQRELESLEREKVRIRFLGDLEGLPSGLQELISEATELTVRNNGIHFNVCTNYGGRRELVLAAQKLAQRA-----ARGDLDPTLIDENSFEAELLT 192

HSP 2 Score: 46.595 bits (109), Expect = 2.628e-19
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 2 
Query:  869 PELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL 1006
            P+LLIRTSGE R SNFLLWQLAY  + + TD    D  +  + ++L
Sbjct:  198 PDLLIRTSGERRISNFLLWQLAYAEIHV-TDVCWPDFDEVALTKAL 242
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_BORPE (Undecaprenyl pyrophosphate synthetase OS=Bordetella pertussis GN=uppS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.421e-19
Identity = 39/123 (31.71%), Postives = 71/123 (57.72%), Query Frame = 3 
Query:  486 VRMLIIFLINFY-WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPA 851
            VR L +F  +   W +   EV  LM+LF ++++ E++    +G+R+ ++GD S     LQEL+  A++RT++N    L VA +Y G++D++QA +++ +         D IDE+ + + L  A
Sbjct:   60 VRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGLAQDPDRIDEARLAEHLSMA 182

HSP 2 Score: 43.5134 bits (101), Expect = 3.421e-19
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 2 
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEV 994
            P P+L IRT GE R SNFL+WQLAY   F  T+    D G  E+
Sbjct:  185 PEPDLFIRTGGEQRISNFLVWQLAYAE-FYFTEQFWPDFGADEL 227
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_BORPA (Undecaprenyl pyrophosphate synthetase OS=Bordetella parapertussis GN=uppS PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.421e-19
Identity = 39/123 (31.71%), Postives = 71/123 (57.72%), Query Frame = 3 
Query:  486 VRMLIIFLINFY-WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPA 851
            VR L +F  +   W +   EV  LM+LF ++++ E++    +G+R+ ++GD S     LQEL+  A++RT++N    L VA +Y G++D++QA +++ +         D IDE+ + + L  A
Sbjct:   60 VRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGLAQDPDRIDEARLAEHLSMA 182

HSP 2 Score: 43.5134 bits (101), Expect = 3.421e-19
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 2 
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEV 994
            P P+L IRT GE R SNFL+WQLAY   F  T+    D G  E+
Sbjct:  185 PEPDLFIRTGGEQRISNFLVWQLAYAE-FYFTEQFWPDFGADEL 227
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_BORBR (Undecaprenyl pyrophosphate synthetase OS=Bordetella bronchiseptica GN=uppS PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.421e-19
Identity = 39/123 (31.71%), Postives = 71/123 (57.72%), Query Frame = 3 
Query:  486 VRMLIIFLINFY-WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPA 851
            VR L +F  +   W +   EV  LM+LF ++++ E++    +G+R+ ++GD S     LQEL+  A++RT++N    L VA +Y G++D++QA +++ +         D IDE+ + + L  A
Sbjct:   60 VRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGLAQDPDRIDEARLAEHLSMA 182

HSP 2 Score: 43.5134 bits (101), Expect = 3.421e-19
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 2 
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEV 994
            P P+L IRT GE R SNFL+WQLAY   F  T+    D G  E+
Sbjct:  185 PEPDLFIRTGGEQRISNFLVWQLAYAE-FYFTEQFWPDFGADEL 227
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_SALTI (Undecaprenyl pyrophosphate synthetase OS=Salmonella typhi GN=uppS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.422e-19
Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 3 
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W +   EV  LM+LF  ++ SE++      +R+ +IGD SR    LQE +R +E  T +N+   L +A +Y G++D+VQ  + +A+ V+  V+R D IDE  + Q++
Sbjct:   74 WNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAELVQAGVLRPDQIDEERLGQQI 180

HSP 2 Score: 40.817 bits (94), Expect = 3.422e-19
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:  872 ELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAE 991
            +L+IRT GE R SNFLLWQ+AY  ++  TD L  D  + +
Sbjct:  189 DLVIRTGGEHRISNFLLWQIAYAELYF-TDVLWPDFDEQD 227
[Close]
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_CHLTR (Undecaprenyl pyrophosphate synthetase OS=Chlamydia trachomatis GN=uppS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.422e-19
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  540 EVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVL 857
            EV  L  LF   ++S+L       IR+  IGD S+LP+ LQ  +  A   T + S  +LI A++Y  K ++V+A K + Q +    I ++DI E LI   L+ + L
Sbjct:   89 EVAELFSLFNSQLRSKLSFLHDREIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELIFAINYGSKDELVRAFKELHQDLASKKISVNDISEELISSYLDTSGL 194

HSP 2 Score: 51.6026 bits (122), Expect = 3.422e-19
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 2 
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRKEG 1036
            P P+LLIRT GE+R SNFLLWQ+AYT +++ TD L  D    ++  ++  + Q+ + G
Sbjct:  195 PDPDLLIRTGGEMRVSNFLLWQIAYTELYV-TDVLWPDFTANDLLEAIKTYQQRSRRG 251
The following BLAST results are available for this feature:
BLAST of DY263284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
UPPS_STAHJ1.555e-1932.76Undecaprenyl pyrophosphate synthetase OS=Staphyloc... [more]
UPPS_SALTY1.555e-1935.51Undecaprenyl pyrophosphate synthetase OS=Salmonell... [more]
UPPS_SALPA1.555e-1935.51Undecaprenyl pyrophosphate synthetase OS=Salmonell... [more]
UPPS_BUCAP1.556e-1933.63Undecaprenyl pyrophosphate synthetase OS=Buchnera ... [more]
UPPS_PROMM2.628e-1935.09Undecaprenyl pyrophosphate synthetase OS=Prochloro... [more]
UPPS_BORPE3.421e-1931.71Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_BORPA3.421e-1931.71Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_BORBR3.421e-1931.71Undecaprenyl pyrophosphate synthetase OS=Bordetell... [more]
UPPS_SALTI3.422e-1935.51Undecaprenyl pyrophosphate synthetase OS=Salmonell... [more]
UPPS_CHLTR3.422e-1934.91Undecaprenyl pyrophosphate synthetase OS=Chlamydia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11BD01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263284 ID=DY263284; Name=DY263284; organism=Citrus clementina; type=EST; length=1116bp
ACCACTAGTTAGTTCATCGCTAACTTGTTATCGTGAATTCTCCAGTTCCA
AACACTCTCTTTGCCCCGAAACTCAATCCTTCGCGCTCCCAAACCCGCAT
CACACCTCCGTTTTCTCTTCGCAAGGTTCGAGCAGCAGCGGCGGCGGCGT
TCGAATGAGAGGATTTCAGATTTGTCTCTGGAGGAGGAGGAGTTGCCGGC
GGGACTAAATAGGGAGGCGAACGATTGTTTTTATCACTAGTTGTTGCTTA
ATTTTAAAACCACAGTAGCTAAAGAACGAACGATTGTTTTTATCACCACG
CAATTACACTCAACGACTATGATTTCATTTCATTTCATTTCGCAGCAACT
TAGGATTAAAAGTCACGACACCCCGATACTAGCTGGCTAATTAATTGATC
CGAGTAACGATAAACGTGCAACAGACACAGTTTTGTAACCAAGTGTCAAA
ACAACATCGTTTTGAGGAATTTGATTTTGCCACTTGTTCGCATGCTTATC
ATTTTTCTAATTAATTTTTATTGGTTAAAAGTGCAGGTGGAGGTCGAATT
CTTGATGAAACTGTTCGAAAAATCCATAAAGTCGGAGCTAGAGGGTTTCA
TAAGCGAAGGTATTCGAATATCTATGATTGGGGATTCATCGAGACTCCCA
AGGACTCTCCAGGAACTTGTACGTGATGCAGAGGATAGAACAAAAAATAA
CTCAAATTTCCAACTCATTGTGGCAGTTAGCTACAGCGGCAAATATGATG
TTGTACAGGCTTGCAAAAGTATTGCACAGAAAGTGAAGGACGATGTTATT
CGACTGGACGACATCGATGAAAGCCTGATTGAGCAAGAACTAGAACCAGC
TGTACTGATTACCCATTCCCGGAACTATTGATTAGAACCAGTGGTGAACT
AAGAAGTAGTAACTTCTTACTCTGGCAGTTGGCATACACCAGAGTTTTTC
TTCGTACAGACACCTTGGGCCTGGATTTGGGCAAAGCTGAAGTTGGGAGA
AGCCTTTAACTTCATTTCCAGCAAAGGAAGGAAGGGGCTATGGTAAACAA
AATTTCAAAAGCGGGCAATTGGCTGGGGGTCTTTAATAAAAAATTAGGGC
TGCAGCCTCTAAAGCC
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