DY263284

Overview
NameDY263284
Unique NameDY263284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_SHEON (Undecaprenyl pyrophosphate synthetase OS=Shewanella oneidensis GN=uppS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.310e-16
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            W +   EV  LM+LF   ++ E++      +++++IGD SR    LQ+ +R AE++T  NS   L VA +Y G++D++QA + +A+KV+   +      E  + + L
Sbjct:   94 WRRPDKEVSLLMELFFTVLQREIKLLDKNQVKLNIIGDISRFSARLQKQIRAAEEKTAGNSGLILNVAANYGGRWDILQAAQKLAEKVETGEMTSSQFTEEALSEHL 200          

HSP 2 Score: 36.965 bits (84), Expect = 5.310e-16
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2
Query:  872 ELLIRTSGELRSSNFLLWQLAYTR-VFLRT 958
            +L+IRT G+ R SNF+LWQ AY   VFL T
Sbjct:  209 DLIIRTGGDYRISNFVLWQAAYAELVFLDT 238          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_PYRFU (Undecaprenyl pyrophosphate synthetase OS=Pyrococcus furiosus GN=uppS PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.317e-16
Identity = 34/103 (33.01%), Postives = 65/103 (63.11%), Query Frame = 3
Query:  540 EVEFLMKLFEKSIKSEL-EGFISE-GIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQEL 842
            EV+ LMKLFE+  +  + +  + E GIR++++G    LP+ ++E   +AE  T+  +N+ L +A++Y G+ ++V A K I   V +  ++L+DI+E ++ + L
Sbjct:   98 EVDRLMKLFEEKFRELVTDRRVHEYGIRVNVMGRKELLPKNVREAAEEAERVTRKYNNYFLNIALAYGGRSEIVDAIKDIVNDVLEGRLKLEDINEEIVRKYL 200          

HSP 2 Score: 41.9726 bits (97), Expect = 5.317e-16
Identity = 17/29 (58.62%), Postives = 25/29 (86.21%), Query Frame = 2
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVF 949
            P P+++IRT GE+R SNFLL+Q+AY+ +F
Sbjct:  206 PDPDIVIRTGGEVRISNFLLYQIAYSELF 234          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_RHOBA (Undecaprenyl pyrophosphate synthetase OS=Rhodopirellula baltica GN=uppS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.931e-16
Identity = 35/127 (27.56%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  477 LPLVRMLIIFLINFYWLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVL 857
            L L  + +  L +  W + Q E++FLM L ++ +  E      + +R+  IG   RL   + + +   +  ++NN+  +L++AV Y G+ ++ +  + +AQ+V+D    +D+I ESL+++ L+ A L
Sbjct:   54 LKLDALTLYCLSSENWKRPQAELDFLMHLLQQYLVEERRTIRDQNMRLRFIGRRDRLSDEVLKEIAKTQAVSENNTGTELVLAVDYGGRDELTRMTRQLAQQVRDGERSIDEITESLVDESLDTAGL 180          

HSP 2 Score: 38.5058 bits (88), Expect = 6.931e-16
Identity = 14/29 (48.28%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVF 949
            P  +L+IRT G++R SN+LLWQ++Y  ++
Sbjct:  181 PDVDLMIRTGGDIRISNYLLWQISYAELY 209          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_ENTFA (Undecaprenyl pyrophosphate synthetase OS=Enterococcus faecalis GN=uppS PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.976e-16
Identity = 34/118 (28.81%), Postives = 60/118 (50.85%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVLITHSRN 875
            W +   EV FLM+L      + +   I E ++++++G    LP   Q+ V+ A ++TK+N+   L  A++Y  + +++ A K IA +V +     D+I E  I   L    L T  R+
Sbjct:   84 WKRPTDEVNFLMQLPVDFFDTFVPELIKENVKVNVMGYQEFLPSHTQDAVKRAIEQTKDNTGMVLNFALNYGARAELLTAMKQIAAEVSEKAYTADEITEETIADHLMTGFLPTELRD 201          

HSP 2 Score: 47.3654 bits (111), Expect = 8.976e-16
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 2
Query:  854 TDYPFPELLIRTSGELRSSNFLLWQLAYTRVF 949
            T+   PELLIRTSGE R SNFLLWQ+AY+ +F
Sbjct:  197 TELRDPELLIRTSGEERISNFLLWQIAYSELF 228          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_THEVO (Undecaprenyl pyrophosphate synthetase OS=Thermoplasma volcanium GN=uppS PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.990e-16
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  540 EVEFLMKLFEKSIKSEL--EGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDES 824
            EV+FL  L   +  S L  E      I + +IG+ S LP  L+E ++  E+ TKN SN+ + +A+ Y G+ +++ A K IA+      I +D+IDES
Sbjct:   92 EVDFLFHLINDAFISLLKDERVYKNKINVKVIGNVSMLPEYLRETIKITEETTKNFSNYHMNLAIGYGGREEILDAIKRIARDAIAGKINVDEIDES 188          

HSP 2 Score: 43.5134 bits (101), Expect = 8.990e-16
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  863 PFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            P P+L++RTSGE R SNFLLWQ AY+ ++  +D    +  K +  R++   +Q+R+
Sbjct:  200 PDPDLILRTSGEERISNFLLWQSAYSELYF-SDVYWPEFSKLDFLRAI-YSYQRRQ 253          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_BUCAI (Undecaprenyl pyrophosphate synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=uppS PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.997e-16
Identity = 32/113 (28.32%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  522 WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVLI 860
            W +   E++ LM+LF  ++ +E++      IR  +IGD +   + LQ  +  AE  T +N+   L +A +Y G++D++++ K I  +V+  ++ ++ I E+ I Q L  + L+
Sbjct:   75 WNRPLFEIKALMELFLFALDTEIKNLKKHNIRFKVIGDITCFDKKLQNSIHYAEQITFDNTGLILNIAANYGGRWDIIESVKKIINRVQRGILDVNKIHENTISQYLSTSELL 187          

HSP 2 Score: 41.2022 bits (95), Expect = 8.997e-16
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 2
Query:  872 ELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLD 976
            +L+IRT GE R SNFLLWQ+AY+ ++  TD L  D
Sbjct:  190 DLVIRTGGEKRISNFLLWQIAYSELYF-TDVLWPD 223          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_NEIG1 (Undecaprenyl pyrophosphate synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=uppS PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 9.001e-16
Identity = 32/116 (27.59%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  462 LRNLILPLVRMLIIFLINFY-----WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQAC-KSIAQKVKD 791
            L N++    ++ + +L  F      W + + EV FLM LF ++++ ++       +R+ ++G   R  R + + + +AE  T NN+   L +A  Y G++D++QA  K IA+ V +
Sbjct:   47 LENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGVSE 162          

HSP 2 Score: 47.7506 bits (112), Expect = 9.001e-16
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 2
Query:  857 DYPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDLGKAEVGRSL*LHFQQRK 1030
            D P P+L IRT GE R SNFLLWQ+AY  ++  TD L  D  +  +  ++   FQ+R+
Sbjct:  176 DAPEPDLFIRTGGETRISNFLLWQMAYAELYF-TDILWPDFDETALDAAV-ASFQKRE 231          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_NEIMB (Undecaprenyl pyrophosphate synthetase OS=Neisseria meningitidis serogroup B GN=uppS PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.170e-15
Identity = 32/116 (27.59%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  462 LRNLILPLVRMLIIFLINFY-----WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQAC-KSIAQKVKD 791
            L N++    ++ + +L  F      W + + EV FLM LF ++++ ++       +R+ ++G   R  R + + + +AE  T NN+   L +A  Y G++D++QA  K IA+ V +
Sbjct:   47 LENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGVSE 162          

HSP 2 Score: 47.3654 bits (111), Expect = 1.170e-15
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  857 DYPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDL-GKA 988
            D P P+L IRT GE R SNFLLWQ+AY  ++  TD L  D  GKA
Sbjct:  176 DAPEPDLFIRTGGETRISNFLLWQMAYAELYF-TDILWPDFDGKA 219          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_NEIMA (Undecaprenyl pyrophosphate synthetase OS=Neisseria meningitidis serogroup A GN=uppS PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.520e-15
Identity = 32/116 (27.59%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  462 LRNLILPLVRMLIIFLINFY-----WLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQAC-KSIAQKVKD 791
            L N++    ++ + +L  F      W + + EV FLM LF ++++ ++       +R+ ++G   R  R + + + +AE  T NN+   L +A  Y G++D++QA  K IA+ V +
Sbjct:   47 LENMVKHCAKLGVQYLTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILKGIEEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAEGVSE 162          

HSP 2 Score: 47.3654 bits (111), Expect = 1.520e-15
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 2
Query:  857 DYPFPELLIRTSGELRSSNFLLWQLAYTRVFLRTDTLGLDL-GKA 988
            D P P+L IRT GE R SNFLLWQ+AY  ++  TD L  D  GKA
Sbjct:  176 DAPEPDLFIRTGGETRISNFLLWQMAYAELYF-TDILWPDFDGKA 219          
BLAST of DY263284 vs. ExPASy Swiss-Prot
Match: UPPS_RICFE (Undecaprenyl pyrophosphate synthetase OS=Rickettsia felis GN=uppS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.524e-15
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  468 NLILPLVRMLIIFLINFYWLKVQVEVEFLMKLFEKSIKSELEGFISEGIRISMIGDSSRLPRTLQELVRDAEDRTKNNSNFQLIVAVSYSGKYDVVQACKSIAQKVKDDVIRLDDIDESLIEQELEPAVLI 860
            NL +P + +      N  W +   EV+FL+KL     K+EL      G++I +IG  + L  +LQ+ + +A + TKNN+   L +A SY  + ++V AC  I    K ++    DI  +L + E+    L+
Sbjct:   54 NLNIPYITLYTFSSEN--WQRSSTEVDFLIKLLSIYFKNELNSLHKNGVKIKVIGRLNLLSSSLQKQINNAIELTKNNNKITLCIAFSYGSRQEIVDACTKIIASGKKEISE-SDIGHALYDPEMPDVDLL 181          

HSP 2 Score: 35.8094 bits (81), Expect = 1.524e-15
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  857 DYPFPELLIRTSGELRSSNFLLWQLAYTRVF 949
            + P  +LLIR  G  R SNFLLWQ AY  ++
Sbjct:  174 EMPDVDLLIRPGGVYRISNFLLWQAAYAELY 204          
The following BLAST results are available for this feature:
BLAST of DY263284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
UPPS_SHEON5.310e-1631.78Undecaprenyl pyrophosphate synthetase OS=Shewanell... [more]
UPPS_PYRFU5.317e-1633.01Undecaprenyl pyrophosphate synthetase OS=Pyrococcu... [more]
UPPS_RHOBA6.931e-1627.56Undecaprenyl pyrophosphate synthetase OS=Rhodopire... [more]
UPPS_ENTFA8.976e-1628.81Undecaprenyl pyrophosphate synthetase OS=Enterococ... [more]
UPPS_THEVO8.990e-1636.08Undecaprenyl pyrophosphate synthetase OS=Thermopla... [more]
UPPS_BUCAI8.997e-1628.32Undecaprenyl pyrophosphate synthetase OS=Buchnera ... [more]
UPPS_NEIG19.001e-1627.59Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_NEIMB1.170e-1527.59Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_NEIMA1.520e-1527.59Undecaprenyl pyrophosphate synthetase OS=Neisseria... [more]
UPPS_RICFE1.524e-1530.53Undecaprenyl pyrophosphate synthetase OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11BD01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263284 ID=DY263284; Name=DY263284; organism=Citrus clementina; type=EST; length=1116bp
ACCACTAGTTAGTTCATCGCTAACTTGTTATCGTGAATTCTCCAGTTCCA
AACACTCTCTTTGCCCCGAAACTCAATCCTTCGCGCTCCCAAACCCGCAT
CACACCTCCGTTTTCTCTTCGCAAGGTTCGAGCAGCAGCGGCGGCGGCGT
TCGAATGAGAGGATTTCAGATTTGTCTCTGGAGGAGGAGGAGTTGCCGGC
GGGACTAAATAGGGAGGCGAACGATTGTTTTTATCACTAGTTGTTGCTTA
ATTTTAAAACCACAGTAGCTAAAGAACGAACGATTGTTTTTATCACCACG
CAATTACACTCAACGACTATGATTTCATTTCATTTCATTTCGCAGCAACT
TAGGATTAAAAGTCACGACACCCCGATACTAGCTGGCTAATTAATTGATC
CGAGTAACGATAAACGTGCAACAGACACAGTTTTGTAACCAAGTGTCAAA
ACAACATCGTTTTGAGGAATTTGATTTTGCCACTTGTTCGCATGCTTATC
ATTTTTCTAATTAATTTTTATTGGTTAAAAGTGCAGGTGGAGGTCGAATT
CTTGATGAAACTGTTCGAAAAATCCATAAAGTCGGAGCTAGAGGGTTTCA
TAAGCGAAGGTATTCGAATATCTATGATTGGGGATTCATCGAGACTCCCA
AGGACTCTCCAGGAACTTGTACGTGATGCAGAGGATAGAACAAAAAATAA
CTCAAATTTCCAACTCATTGTGGCAGTTAGCTACAGCGGCAAATATGATG
TTGTACAGGCTTGCAAAAGTATTGCACAGAAAGTGAAGGACGATGTTATT
CGACTGGACGACATCGATGAAAGCCTGATTGAGCAAGAACTAGAACCAGC
TGTACTGATTACCCATTCCCGGAACTATTGATTAGAACCAGTGGTGAACT
AAGAAGTAGTAACTTCTTACTCTGGCAGTTGGCATACACCAGAGTTTTTC
TTCGTACAGACACCTTGGGCCTGGATTTGGGCAAAGCTGAAGTTGGGAGA
AGCCTTTAACTTCATTTCCAGCAAAGGAAGGAAGGGGCTATGGTAAACAA
AATTTCAAAAGCGGGCAATTGGCTGGGGGTCTTTAATAAAAAATTAGGGC
TGCAGCCTCTAAAGCC
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