High-Density Genetic Map Construction and Identification of QTLs Controlling Leaf Abscission Trait in Poncirus trifoliata.

Publication Overview
TitleHigh-Density Genetic Map Construction and Identification of QTLs Controlling Leaf Abscission Trait in Poncirus trifoliata.
AuthorsXu YY, Liu SR, Gan ZM, Zeng RF, Zhang JZ, Hu CG
TypeJournal Article
Journal NameInternational journal of molecular sciences
Volume22
Issue11
Year2021
CitationXu YY, Liu SR, Gan ZM, Zeng RF, Zhang JZ, Hu CG. High-Density Genetic Map Construction and Identification of QTLs Controlling Leaf Abscission Trait in Poncirus trifoliata.. International journal of molecular sciences. 2021 May 27; 22(11).

Abstract

A high-density genetic linkage map is essential for genetic and genomic studies including QTL mapping, genome assembly, and comparative genomic analysis. Here, we constructed a citrus high-density linkage map using SSR and SNP markers, which are evenly distributed across the citrus genome. The integrated linkage map contains 4163 markers with an average distance of 1.12 cM. The female and male linkage maps contain 1478 and 2976 markers with genetic lengths of 1093.90 cM and 1227.03 cM, respectively. Meanwhile, a genetic map comparison demonstrates that the linear order of common markers is highly conserved between the clementine mandarin and Poncirus trifoliata. Based on this high-density integrated citrus genetic map and two years of deciduous phenotypic data, two loci conferring leaf abscission phenotypic variation were detected on scaffold 1 (including 36 genes) and scaffold 8 (including 107 genes) using association analysis. Moreover, the expression patterns of 30 candidate genes were investigated under cold stress conditions because cold temperature is closely linked with the deciduous trait. The developed high-density genetic map will facilitate QTL mapping and genomic studies, and the localization of the leaf abscission deciduous trait will be valuable for understanding the mechanism of this deciduous trait and citrus breeding.

Features
This publication contains information about 4,158 features:
Feature NameUniquenameType
HAU21_Marker936922HAU21_Marker936922genetic_marker
HAU21_Marker938321HAU21_Marker938321genetic_marker
HAU21_Marker938445HAU21_Marker938445genetic_marker
HAU21_Marker938561HAU21_Marker938561genetic_marker
HAU21_Marker939702HAU21_Marker939702genetic_marker
HAU21_Marker939970HAU21_Marker939970genetic_marker
HAU21_Marker940738HAU21_Marker940738genetic_marker
HAU21_Marker941074HAU21_Marker941074genetic_marker
HAU21_Marker941305HAU21_Marker941305genetic_marker
HAU21_Marker941621HAU21_Marker941621genetic_marker
HAU21_Marker941930HAU21_Marker941930genetic_marker
HAU21_Marker943876HAU21_Marker943876genetic_marker
HAU21_Marker944449HAU21_Marker944449genetic_marker
HAU21_Marker944598HAU21_Marker944598genetic_marker
HAU21_Marker944696HAU21_Marker944696genetic_marker
HAU21_Marker945881HAU21_Marker945881genetic_marker
HAU21_Marker946161HAU21_Marker946161genetic_marker
HAU21_Marker946178HAU21_Marker946178genetic_marker
HAU21_Marker949521HAU21_Marker949521genetic_marker
HAU21_Marker950702HAU21_Marker950702genetic_marker
HAU21_Marker951818HAU21_Marker951818genetic_marker
HAU21_Marker955544HAU21_Marker955544genetic_marker
HAU21_Marker957948HAU21_Marker957948genetic_marker
HAU21_Marker958543HAU21_Marker958543genetic_marker
HAU21_Marker958904HAU21_Marker958904genetic_marker

Pages

Featuremaps
This publication contains information about 2 maps:
Map Name
Citrus-Clementine/Trifoliate-HAU21-F1-Maternal
Citrus-Clementine/Trifoliate-HAU21-F1-Paternal
Stocks
This publication contains information about 1 stocks:
Stock NameUniquenameType
Clementine/Trifoliate-HAU21-F1Clementine/Trifoliate-HAU21-F1population
Properties
Additional details for this publication include:
Property NameValue
Publication ModelElectronic
ISSN1422-0067
eISSN1422-0067
Publication Date2021 May 27
Journal AbbreviationInt J Mol Sci
PII5723
Elocation10.3390/ijms22115723
DOI10.3390/ijms22115723
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountrySwitzerland