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Overview
| Analysis Name | Citrus maxima (C. grandis) genome v1.0 |
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| Method | whole genome shotgun sequencing, Illumina and PacBio (Assembly with HGAP, SMRT Analysis v2.3.0) |
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| Source | Huazhong Ag. Univ. |
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| Date performed | 2017-04-10 |
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About the assembly
For this genome, please cite Wang et al, Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction. This data was downloaded from the Citrus sinensis Annotation Project website. This genome has been anchored to the C. grandis linkage map. This data is also on NCBI under BioProject PRJNA318855. Per the project website, the cultivar is Wanbaiyou, BioSample does not provide the cultivar name.
Assembly metrics
| Assembly size |
345 Mb |
| Number of scaffolds |
1,612 |
| N50 |
4,210,623 |
| Predicted transcripts |
42,886 |
| Annotated genes |
30,123 |
| Assembly BUSCO score (embryophyta_odb10) |
99.0% |
| Annotation BUSCO score (embryophyta_odb10) |
95.4% |
Download
To download the genome assembly and annotation files, please visit the CGD data repository.
Homology Analysis:
The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab. Results were parsed into an Excel format.
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