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Overview
| Analysis Name | Citrus reticulata genome v1.0 |
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| Method | whole genome shotgun sequencing, Illumina (Assembly with Platanus and GapCloser) |
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| Source | Huazhong Ag. Univ. |
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| Date performed | 2018-07-09 |
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About the assembly
For this genome, please cite Wang et al, Genome of wild mandarin and domestication history of mandarin. This data was downloaded from the Citrus sinensis Annotation Project website. This data is also on NCBI under BioProject PRJNA388397, listed BioSample cultivar designation is Mangshan (sample = MSYJ). Manuscript states accession WM01 was sequenced.
Assembly metrics
| Assembly size |
347 Mb |
| Number of scaffolds |
90,139 |
| N50 |
1,585,532 bp |
| Predicted transcripts |
42,653 |
| Annotated genes |
28,833 |
| Assembly BUSCO score (embryophyta_odb10) |
98.5% |
| Annotation BUSCO score (embryophyta_odb10) |
95.2% |
Downloads
To download the genome assembly and annotation files, please visit the CGD data repository.
Homology Analysis:
The protein homolog searches were performed using BLAST (e-value cutoff of 1e-6) and the Swissprot and TrEMBL protein databases by the Main Bioinformatics Lab. Results were parsed into an Excel format.
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