DY270331

Overview
NameDY270331
Unique NameDY270331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1275
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 8.036e-63
Identity = 123/151 (81.46%), Postives = 128/151 (84.77%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTLQRKRARIAEKK+R+AKAK+E AEY
Sbjct:   63 MKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEY 213
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 1.160e-61
Identity = 121/151 (80.13%), Postives = 127/151 (84.11%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTLQRKRARIA+KK+RIAKA ++ A+Y
Sbjct:   63 MKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADY 213
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 1.676e-60
Identity = 118/151 (78.15%), Postives = 127/151 (84.11%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTLQRKRARIA+KK++IAKA ++ A+Y
Sbjct:   63 MKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADY 213
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 4.281e-48
Identity = 107/151 (70.86%), Postives = 116/151 (76.82%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTLQRKRARIA+KK+RIAKAK+E AEY
Sbjct:   18 MKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTK--WKGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEY 163
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38
Identity = 92/151 (60.93%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K K E AEY
Sbjct:   63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY 209
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38
Identity = 92/151 (60.93%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K K E AEY
Sbjct:   63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY 209
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38
Identity = 92/151 (60.93%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K K E AEY
Sbjct:   63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY 209
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.355e-38
Identity = 92/151 (60.93%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K K E AEY
Sbjct:   63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY 209
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.016e-38
Identity = 92/151 (60.93%), Postives = 101/151 (66.89%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+       K  +KAPKIQRLVTP  LQ KR RIA KKQR  K K E AEY
Sbjct:   63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY 209
[Close]
BLAST of DY270331 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 5.245e-38
Identity = 91/151 (60.26%), Postives = 102/151 (67.55%), Query Frame = 2 
Query:    2 MKQGLLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAETAEY 454
            MKQG+LT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  K K E A+Y
Sbjct:   63 MKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADY 209
The following BLAST results are available for this feature:
BLAST of DY270331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASPOF8.036e-6381.4640S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH1.160e-6180.1340S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH1.676e-6078.1540S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC4.281e-4870.8640S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_RAT2.355e-3860.9340S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE2.355e-3860.9340S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA2.355e-3860.9340S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN2.355e-3860.9340S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN4.016e-3860.9340S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_CHICK5.245e-3860.2640S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270331 ID=DY270331; Name=DY270331; organism=Citrus clementina; type=EST; length=1275bp
CATGAAGCAAGGCTTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACC
GTGGTACCCCTTGCTTCCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGG
AGGAAGTCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAA
TTTGGTCATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATA
CAGAAAAGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAG
TTGTTCAACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTA
TCGTAGGACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGA
AAATTCAGAGGTTGGTAACTCCTTTGACTCTGCAAAGGAAGCGTGCAAGA
ATTGCAGAAAAGAAGCAGAGAATTGCCAAGGCCAAGGCTGAAACAGCGGA
ATACCCATAAGCTCCTTGCTACCACGCTGAAGGAGCAGCGTGAACCCCGC
CACTGAGATTTTCGCACAAGAATATGGTCTTAGTCTCCCGGCTCCCTCAA
CAGACATCTATCTGCCAGCAACAAACTCAACTACCCTCACAAACATATCC
ATCTCCACAAACCAAGAACTGATCCGTAATGCACTAACACACTCACACTT
CAGCCCCCACGCAACCCACCTTCACACCACTCCCCACAAACGCTACTCAC
ACGGAAACCCCGCACATCTATCAACATAATAATTAATATATTCCCACCTT
AAATACACCGTGTCTACACATACCCAACATACAACACATAAATAGAGGAC
TCATATTGATTCGGAGCTTCCCAATGCCGATTCATCTCTCCGTCCATTCC
TCCGCCAACGCAACTGAAACTAGGTGCAAACACCCACACTGTGTTCCCTA
CCACCACCAACCCTTGCTTCTTACGACCACTGTTGTAACGCATCTATTAA
AGAGACTCATGCTACTCTCTCTCTGTCTTCCATCATTTATAGCTGCCATG
ATCTCTATCTGTACCCCCTAGATCTTCCTCACAATCTTATTACGTGCTCC
CCGGACTATCCCCCTCTGTTCAGCGCCCCTCCTTCTAAACTAACGATCAG
ATTCTTATCTCTCCCTACCCCCTACCTACCACTCTCCCACACACAACGCC
ACCCACTGCGCCCCCTCCTACGCACAACCTATTATGTGCCACACAACCGT
GATCCATATATTATGTATTCATTGCCTTTATCCTTATCTATTAGACAATA
CGCATGTTTACAATATTCCACTCTA
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