DY270494

Overview
NameDY270494
Unique NameDY270494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1192
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 2.130e-78
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHSRGKGIS+SALPYKRTPPSWLKISSQDVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 7.575e-76
Identity = 142/151 (94.04%), Postives = 147/151 (97.35%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHSRGKGISASALPYKR+ PSWLK +SQDV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 2.879e-75
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHSRGKGISASALPYKR+ PSWLK + QDV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 6.413e-75
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG +HS+GKGIS+SALPY+RT PSWLKISSQDV++ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct:    1 MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 3.083e-69
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHSRGKGIS+SALPYKRTPPSWLK ++ DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 4.026e-69
Identity = 131/151 (86.75%), Postives = 138/151 (91.39%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHSRGKGIS+SALPYKRTPP+WLK ++ DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:    1 MGAMHSRGKGISSSALPYKRTPPTWLKTAASDVEEMITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 1.530e-68
Identity = 130/151 (86.09%), Postives = 138/151 (91.39%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MHSRGKGIS+SA+PYKRTPPSW+K ++ DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct:    1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 9.605e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 9.605e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
BLAST of DY270494 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 9.605e-63
Identity = 116/151 (76.82%), Postives = 136/151 (90.07%), Query Frame = 3
Query:    9 MGCMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 461
            MG MH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
The following BLAST results are available for this feature:
BLAST of DY270494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_SOYBN2.130e-7896.6940S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS132_ARATH7.575e-7694.0440S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH2.879e-7593.3840S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_PEA6.413e-7592.7240S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS132_ORYSJ3.083e-6987.4240S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS13_MAIZE4.026e-6986.7540S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS131_ORYSJ1.530e-6886.0940S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_XENLA9.605e-6376.8240S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT9.605e-6376.8240S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]
RS13_MOUSE9.605e-6376.8240S ribosomal protein S13 OS=Mus musculus GN=Rps13... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270494 ID=DY270494; Name=DY270494; organism=Citrus clementina; type=EST; length=1192bp
CCGCCAGCATGGGTTGTATGCACAGTCGAGGTAAGGGTATTTCCGCATCA
GCTCTGCCTTACAAGAGGACACCACCGAGTTGGCTTAAGATCTCTTCTCA
GGATGTGGAAGATAATATTTGCAAGTTTGCAAAGAAGGGTCTAACACCAT
CTCAAATTGGTGTTATTCTTCGTGATTCTCATGGGATTGCTCAAGTGAAG
AGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCTTGC
TCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCGCTA
TTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTAGG
TTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAGAA
GACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAGCA
CTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTCCAG
GATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGTTAT
TCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAGGGC
GGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCTGGA
TCCTTTTGTTTCCATTTTTGGGACTTTTGAAATTATGATTCTTAAAAGCC
TAATGTTCCCGTCCTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACCCCACCTTTCTTGGTACAAGGTGGGTTTAAAAGAAAGGTTTGGCTTAT
CATTTTGTGGCCCGAAACGGCCCCCTCCAGTCCAAAAATAAAATCTTTAC
TTGCCCCCCGCCGGAACCCCCCAATATAGGTCCAAATAAAGGGTCCAACC
CGGTCCCCGCGCCCCCCGGCCCCCGGGCCCCACACTCCCCTACGCTGCAT
TGGGCACGCTATAAATTCATTCCTCTCCTTAACAAAACACCCTCACGGTC
TCCTCATCGCACAACCCTATCTTCTATTTCATGCCGGTGTATCTAACCAT
CACTTTTTTCTCAAACGCACCCTTCCCATTCAATAAAGACATATCACCTC
CCTCCCAGAACGCCTTATCCATCCAATTAGCGGATCAATCTCCCGCGCCC
CCAACCCTCCCTAATATCGCCCACATCATCCGCTCCCCACTT
back to top