DY270845

Overview
NameDY270845
Unique NameDY270845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1177
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.586e-36
Identity = 79/165 (47.88%), Postives = 103/165 (62.42%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPCRIISEEGEAISLDLGVGISSATENRSNEQPRXXXXXXXXXXXXXXXXXYKIIQANAVTAYSGVVNGGMNQYGSRGNPTEGRGVDFPPLNHSSYPYPQNIGRILTGP 524
            RSYYKCT  GCPVRKHVERASHDPKAVITTYEGKH+HDVPT+++SS+    P       R   +E + ISL+LGVGISS   N ++ +                   ++ + A+ +++Y   +N GMNQYG R    E +  D   LN+SSYPYP N+GR+ +GP
Sbjct:  401 RSYYKCTAHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTSKSSSNHEIQP-------RFRPDETDTISLNLGVGISSDGPNHASNE-HQHQNQQLVNQTHPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLNNSSYPYPPNMGRVQSGP 557          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.426e-18
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNG 200
            RSYYKCT  GC VRKHVERASHD K+VITTYEGKHNHDVP AR SSH   G S GNG
Sbjct:  507 RSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGGGDS-GNG 562          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.587e-17
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAA 179
            RSYYKCT  GC VRKHVERA+ DPKAV+TTYEGKHNHD+P A++SSH AA
Sbjct:  429 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAAA 478          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.823e-17
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSH 170
            RSYYKCT  GCPVRKHVERASHD +AVITTYEGKHNHDVP AR S +
Sbjct:  382 RSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAARGSGY 428          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.022e-16
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSH 170
            RSYYKCT   C VRKHVERA+ DPKAV+TTYEGKHNHDVP ARTSSH
Sbjct:  435 RSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSH 481          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.517e-15
Identity = 46/84 (54.76%), Postives = 53/84 (63.10%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPSAGNGPC---RIISEEGEAISLDLGVGISSAT 272
            RSYYKCT   C VRKHVERAS D KAVITTYEGKHNHDVP AR  +  AA  +A  GP    R+ S  G  +   +  G ++ T
Sbjct:  326 RSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGT--AAATAAAVGPSDHHRMRSMSGNNMQQHMSFGNNNNT 407          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.199e-14
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHD 173
            RSYY+C++ GCPV+KHVER+SHD K +ITTYEGKH+HD+P  R  +H+
Sbjct:  327 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVVTHN 374          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.076e-13
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTSSHDAAGPS 188
            RSYYKCT  GC V KHVERAS D K+V+TTY GKH H VP AR SSH  AG S
Sbjct:  392 RSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSS 444          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 8.951e-13
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAR 158
            RSYYKCT  GC VRKHVERA  DPK+VITTYEGKH H +PT R
Sbjct:  254 RSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296          
BLAST of DY270845 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.879e-11
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 3
Query:   30 RSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTA 155
            RSYYKCT  GC V+K VER++ D +AV+TTYEG+HNHD+PTA
Sbjct:  348 RSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTA 389          
The following BLAST results are available for this feature:
BLAST of DY270845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
WRK20_ARATH2.586e-3647.88Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRKY2_ARATH1.426e-1878.95Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRKY4_ARATH4.587e-1778.00Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK33_ARATH7.823e-1782.98Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY3_ARATH1.022e-1682.98Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK58_ARATH2.517e-1554.76Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRKY1_ARATH6.199e-1464.58WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK34_ARATH3.076e-1369.81Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK26_ARATH8.951e-1376.74Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK25_ARATH2.879e-1169.05Probable WRKY transcription factor 25 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP7YO20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270845 ID=DY270845; Name=DY270845; organism=Citrus clementina; type=EST; length=1177bp
TTCACTGCATTATGCACGAATTGGGAAGCAGGAGTTATTACAAGTGCACA
AATGCTGGATGTCCTGTTCGAAAACACGTGGAGAGAGCATCACATGATCC
AAAAGCAGTTATAACCACATATGAGGGCAAGCATAACCATGATGTACCTA
CCGCAAGGACTAGTAGCCATGATGCAGCTGGACCATCAGCTGGGAATGGA
CCATGCAGGATTATATCAGAAGAAGGCGAGGCAATTAGCCTGGATCTTGG
CGTAGGAATAAGTTCTGCAACTGAAAATAGATCAAATGAGCAGCCACGGG
CACTGCATTCTGAACTTGCCCATAGCCATACCCATGCTAGCAGTTCCAGT
TATAAAATCATTCAAGCAAACGCGGTCACAGCTTATTCTGGTGTTGTAAA
TGGTGGCATGAATCAGTATGGATCTAGAGGGAATCCAACTGAAGGACGTG
GCGTTGACTTTCCACCGTTAAATCATTCTTCTTACCCGTATCCTCAAAAT
ATTGGAAGAATACTAACAGGTCCATGAATTTGATTATACATAGCCGAAAT
AAAATCTCCATGGTTTATTTTGCTTTCTTCTTTTTGGCTGGTAAGGAAAG
AGAGGCTGTAATCCATATCGGAAAATTGTTCTATATATGATAGTTCCCTG
ACACTAGTAGTGGTGCTGTTATGTGTTGCCCCCACACACCAATTGCCTTA
TTCCAACAGCCCTTTGGATTAATTTCCTATAGTTGAATGCCTTGTACAAA
TGTGAAACTGGTACCAATCAAATTTTCTTCAAAGAAAACAATATTGGGGT
AAACCAAGTTCTTTGAAATGGAATTTGTAAGAAATTGAATTGCAAAAAAA
AAAAAAAAAAAAAACCCCACCTTTCTTGGTCAGAGTTTGGCATTTAAAAA
AAAGCCCTTGCCTAACCATTTTTGGGGCAACCCACACCGGTCCCCTATCC
CCTCCAAAAAAAAATTAATAATTTCCCCCCCCCCCCCTCACAACCCCCCA
TCAGCGGCGCTCTGTAAAAACGGGCCACAAACCCTCCTTCCCCCGCCCTC
CCCCGCCCCCCCGCGCCCCCCAACCACCTCCCCTCAGCGCCATCCTCCTC
CCCCACCATACACAACACAAATACAACCTCCCCCCGCTCTCCTTCCACAT
CACACCTCCCTCTCGCCCCCCATCTCC
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