DY270846

Overview
NameDY270846
Unique NameDY270846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270846 vs. ExPASy Swiss-Prot
Match: PIR_ARATH (Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.999e-64
Identity = 116/146 (79.45%), Postives = 128/146 (87.67%), Query Frame = 3
Query:    3 TSKDFYRIYSGLQIGYLEESSQTPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRG 440
            TSKDFYRIY GLQIGYLEE +   S  H+VLGDS+AWGGCTIIYLLGQQLHFELFDFSYQVLNV+EVE +S   + ++P   QGWE L+E MKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPL R++FENTVSAFETLPQ+G
Sbjct: 1135 TSKDFYRIYGGLQIGYLEEITAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVLNVSEVETVSASHTHRNPQIHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLPRVRFENTVSAFETLPQKG 1280          
BLAST of DY270846 vs. ExPASy Swiss-Prot
Match: PIRA_DICDI (Protein pirA OS=Dictyostelium discoideum GN=pirA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3
Query:    3 TSKDFYRIYSGLQIGYLEE-SSQTPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKA---RRLNNHVFSMLKARCP 335
            +S +FYR++S LQ       S++   + H++ GD + W GC++I+ LGQQ  FELFDF Y +LNV E  A+   +S K         AL    K A   + +NN +FS+L   CP
Sbjct: 1126 SSTEFYRLWSALQFVICWPLSNENDKSFHELFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAV---RSDK--------PALKNFFKNAQIIKDINNQIFSILNTYCP 1229          
The following BLAST results are available for this feature:
BLAST of DY270846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PIR_ARATH1.999e-6479.45Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV... [more]
PIRA_DICDI1.606e-1338.26Protein pirA OS=Dictyostelium discoideum GN=pirA P... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP7YO21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270846 ID=DY270846; Name=DY270846; organism=Citrus clementina; type=EST; length=661bp
CAACTTCAAAGGATTTCTATCGCATATATTCTGGTCTTCAAATTGGATAT
CTAGAGGAGTCTTCTCAAACTCCGTCTAACAATCACAAAGTGCTTGGTGA
TTCAGTGGCATGGGGTGGTTGTACCATAATATACTTGCTTGGGCAACAAC
TACATTTTGAGCTTTTTGATTTTTCGTATCAAGTTCTCAATGTTGCTGAA
GTGGAAGCTATATCAGTCCCACAGTCACAAAAGCATCCCCATTTTGGCCA
GGGATGGGAAGCCCTAATAGAAGCAATGAAGAAAGCAAGGAGACTGAACA
ACCATGTATTCTCCATGCTGAAAGCACGTTGTCCCCTCGAAGACAAGACA
GCTTGTGCTATAAAGCAAAGTGGTGCTCCCCTGCATCGGATTAAGTTTGA
GAATACTGTCTCGGCATTTGAAACTCTGCCACAGAGAGGTGTCTGATAGT
CGGTAGTTTTACCCACTGCTGTTGCCTTCTCATCTATGTTATTTTCTCCG
ACACAAAGTAGATTTAGTCATATTCTGTAAACTGTTTCCATGTATTATGT
ATTATTAGGATTCAGAAAGAAATGTATATACCTCCCGAATGCTATCTTAA
CGTTGGTGTCCATATTGAATGTCCCAATTTTGTTCTTTCTAGTATACTTG
TGAGTTTCGTA
back to top