DY270856

Overview
NameDY270856
Unique NameDY270856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1118
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270856 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.347e-79
Identity = 153/233 (65.67%), Postives = 173/233 (74.25%), Query Frame = 3
Query:   69 VDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIQRFTYDDYILASVTLYLDILNLFISILPVPRSSD 764
            +DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP              +QMFFPLG TS AVYGG SALVFCGYIVYDTDNLI+RFTYD+YILASV LYLDILNLF++IL + R  D
Sbjct:   23 IDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNLFLTILRILRQGD 255          
BLAST of DY270856 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.911e-25
Identity = 65/204 (31.86%), Postives = 109/204 (53.43%), Query Frame = 3
Query:  132 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIQRFTYDDYILASVTLYLDILNLFISIL 743
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT  + +   DF+  G               +++FF    T   V   + AL+FCG+I+YDT +L+ R + ++Y++A+++LY+DI+NLF+ +L
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYMDIINLFLHLL 229          
BLAST of DY270856 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.050e-23
Identity = 66/204 (32.35%), Postives = 105/204 (51.47%), Query Frame = 3
Query:  132 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIQRFTYDDYILASVTLYLDILNLFISIL 743
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT  + K   DFS  G               ++ FF        V     AL+FCG+I+YDT +L+ + + ++Y+LA+++LYLDI+NLF+ +L
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYLDIINLFLHLL 229          
BLAST of DY270856 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.855e-21
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 3
Query:  132 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIQRFTYDDYILASVTLYLDILNLFISILPV 749
            +R  F+RKVY ILTAQ+ +T+L   I  L+   +                         +    +P N I L LFT    L +  +      RI+LEA+ +T  V  +LT +TF +     DFS LG               +  F P        + G   LVFCGYI++DT N++ R++ +++I++S+ LYLD +NLFI IL +
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINLFIRILQI 256          
BLAST of DY270856 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.266e-17
Identity = 64/222 (28.83%), Postives = 99/222 (44.59%), Query Frame = 3
Query:   87 DGERLYPG-LSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDNLIQRFTYDDYILASVTLYLDILNLFISILPV 749
            D + + PG +      +R  F+RKV GI+  Q++ T  + +        N                        HVY ++ P+N ++L  FT   ++ +       + ++VLEA ++T  VV SL  YT    +  +DFS                   QMFF +      V     A +FC  +V D D ++ RF+ +DYI A V+LY+DILNLFI IL +
Sbjct:   53 DADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYMDILNLFIRILQI 270          
The following BLAST results are available for this feature:
BLAST of DY270856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH1.347e-7965.67BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE1.911e-2531.86Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN3.050e-2332.35Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO2.855e-2131.55Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL4.266e-1728.83Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YP10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270856 ID=DY270856; Name=DY270856; organism=Citrus clementina; type=EST; length=1118bp
AAATCCAAATCCCTTGAAAGATGTTGGGCTACCAGACGGTGAGGAGCAAA
GATGACGGCCAATTCCAGGTAGATCTGGAAGGCGGAGATGGGGAGAGGCT
TTACCCCGGTCTCAGCTACGGCGAGAACCAGCTCCGATGGGGTTTCATTC
GCAAGGTGTACGGCATCTTGACGGCCCAGATCGTTTTGACCACCTTGGTC
TCCTCAATCACCGTTCTTTACAATCCCATCAACGATCTTCTCAGGGGCAA
TTCTGGCCTTCTCCTCTTCCTCTCCATCCTCCCCTTCATCCTGTTATGGC
CACTGCATGTGTATCATCAGAAGCACCCTGTGAACTTGATTGTCCTTGGT
CTCTTCACTGTATCTCTGAGTCTTCCTGTTGCTGTAAGCTGTGCTAATAC
CGATGGTAGGATTGTGCTTGAAGCATTAATTCTGACCTCGGCTGTGGTTT
GTTCTTTAACTGGGTACACTTTCTGGGCCTCTAAGAAGGGCAAAGACTTC
AGCTTTCTTGGACCAATTCTATTCACCAGCCTCATAATCCTCATTCTGAC
TAGCTTTATGCAGATGTTCTTTCCTCTGGGATCTACATCCACTGCTGTTT
ATGGTGGAATTAGTGCACTGGTCTTCTGTGGATACATCGTTTACGACACC
GACAACTTGATCCAGCGCTTCACATATGATGATTATATCTTGGCCTCTGT
CACTCTCTATCTGGATATTCTGAACCTTTTCATCTCCATTTTACCGGTGC
CGAGATCCTCAGATGGGTTAGTTGGTCCGTGGTCCACCTACAAGATGTAA
ATCTTTGTGGAAACCCCCTTCCGGTGCCTCAGTTTATGTGTTTGCCCCCC
CCTGAAACCTATTTTCCGAAACCATGTTATTGGAAGAAAAAATTCCTCCC
TCGGAACCTGGTCCCCCCGGAACCAAAAACCCCCCCAAGAATCCCTTGGC
CTCCCCCTTTCCCGAAAAAAAAAAAAAAAAAAAAAACCCCCCCTTTCTTT
GGCCACATGTGGGCTTTAAAAAAAAAACCCTTTTCTCTATCCATTTTTTT
CCCCCCCCACACGGGCCCCCTATCCCCCCCCAAAAAAAAACCCCTAATTT
TTTCCCCCCCCCCCCTCC
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