DY270857

Overview
NameDY270857
Unique NameDY270857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1158
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270857 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.692e-20
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:  250 QVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 441
            +VFVYHKAFPMP +S+ FN+ D +SG E DDA+QFISS+CW GQSS TLVAANS+GNIKILEM+
Sbjct:  782 EVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDASQFISSICWRGQSS-TLVAANSNGNIKILEMM 844
[Close]
BLAST of DY270857 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.159e-19
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:  250 QVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 441
            +VFVYHKAFPMP LS+ F   DP+S  E DDA+QFISSVCW GQSS TLVAANS+GNIKILEMV
Sbjct:  732 EVFVYHKAFPMPVLSYKFKTIDPVSELEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEMV 794
[Close]
BLAST of DY270857 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.438e-12
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  250 QVFVYHKAFPMPALSFNFNHADPLSGPE-TDDAAQFISSVCWCGQSSNTLVAANSSGNIKILEMV 441
            +V+ Y+K+ PMP  S+ F   DP+SG E  DD  QF+SSVCW  + SN LVAANS+GN+K+L++V
Sbjct:  966 EVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCW-RKKSNMLVAANSTGNMKLLKLV 1029
The following BLAST results are available for this feature:
BLAST of DY270857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SPA3_ARATH9.692e-2073.44Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA4_ARATH2.159e-1976.56Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
SPA1_ARATH7.438e-1253.85Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP7YP11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270857 ID=DY270857; Name=DY270857; organism=Citrus clementina; type=EST; length=1158bp
TAATGAGGTCTTTCTGTATCATCTCAGTTGTCCACTTAACATACATCCTC
TGGAGCGGTAGTTGCGGCTGATTTGAGATAACAATTTGTTAGGCTCAGAA
ACTTGTTTTGCAAAATCTGTGGGATAAGTAGTAGAATTCACAAATTGATG
TGGAGCTGAACTAATCAAAACATCAGTTCCCTATATGCTTCCCACTTTTT
GTGTCAGCTGATTTCATTCAAATATTGATGTTAAATATTCTCCTTGGAAC
AGGTTTTTGTGTATCACAAAGCCTTCCCCATGCCAGCTTTATCATTCAAC
TTTAACCATGCGGACCCGTTGTCTGGCCCCGAAACGGATGATGCTGCGCA
GTTTATCTCATCTGTCTGTTGGTGTGGCCAGTCCTCCAACACTTTAGTTG
CTGCAAATTCCTCTGGGAATATAAAAATTTTGGAGATGGTTTAATTTTAC
CTGTGTTCTCCAAATTATTCTTGATTTTAGCAAGGATAATAGAAGATATT
GGTATTGGGTCATGAAAACGGAATGAGGACAGAGTCTGAAACCGAAGAAG
ATTTGTTTGGCTAATGATACAGGTTTACGGGTCAAGGGATCCGCAACCAA
AAAATTTTTTTGGACTAATTAAATAGCGAATGCAACCAAGGAAAACACAC
AATGATCCTGAACCAAATGTATGCAGATTTTTACCTTACTGCGCATGAAG
GGGGCGGAAACACACAACTTCCATACGTTCAACCCCTCAACACCACGGTC
TCTCTCTACACTCCAATGCAACACTGCCCCGCCATCCCTCCGGGACATCA
CCAGGCGCCTCGAAAAAAAAGCCCCGCTATTTCGATCGGGCCCCGCCAAC
CAGCGTCCTATCAGCAATATCAACATTATTTCATCCCCAACACGTCTCAT
TTCCGTCTCCCAACGACTCTACAATTCAAATACTCCACATTAATAACCAT
ATTCTCCTGCCCCCGTCCTACTGATATCCACCATATCCACACAGTCCCAT
CAATAACCTAACCTCATATCTCCTGCCCCCCAACCCATCCAAGCCTCTTA
ACCCCACTACCTCCTCTCAGGACACCCTTTCACTCACATCCCTTCTTCAC
TCCCCTCTCTTCACTCATTTCTCCCTTCCCCCTCTGCTTTTCCCACTTAC
TCTACTCT
back to top