DY270860

Overview
NameDY270860
Unique NameDY270860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1232
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.131e-13
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 2
Query:  266 YKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT 397
            Y+P   + RT+SA+KFGWFF+FYLLHIGFCI A+VAPPI+FKGKSLT
Sbjct:  176 YRPLYRAFRTDSAIKFGWFFMFYLLHIGFCILAAVAPPIVFKGKSLT 222          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM3_ARATH (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.133e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 2
Query:  266 YKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSL 394
            Y+P   + RT+SA+ FGWFFLFY+LHI FC+FA+VAPP++FKGKSL
Sbjct:  177 YRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSL 222          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM1_ARATH (Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.133e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:  254 FLSHYKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT 397
            ++  Y+P   + RT+SA+KFGWFF  YL HI FC+FA+VAPPIIFKGKSLT
Sbjct:  166 YVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLT 216          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.786e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  248 LVFLSHYKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT 397
            L +L  Y+P   + RT+SA  FGWFFL Y+LHI FC+FA++APP+IF+GKSLT
Sbjct:  181 LSYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFCVFAAIAPPVIFRGKSLT 233          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.059e-11
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  248 LVFLSHYKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT 397
            L +L  Y+P   + RT SA  FGWFFL YL+HIGFCI A++APPI+F GKSLT
Sbjct:  173 LSYLIWYRPLYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLT 225          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.806e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  248 LVFLSHYKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT 397
            L ++  Y+P   + RT+SA+KFGWFF  YL+HIGFCI A++APPI F GKSLT
Sbjct:  164 LSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLT 216          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM3_ORYSJ (Secretory carrier-associated membrane protein 3 OS=Oryza sativa subsp. japonica GN=SCAMP3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.359e-11
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  266 YKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSL 394
            Y+P   + RTESA+KFGWFFLFYL+HI FC++A+VAPP  FKGKSL
Sbjct:  170 YRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSL 215          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.081e-11
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  266 YKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSL 394
            Y+P   + R++SA  FGWFFLFY+LHI FC+FA+VAPPI+FKGKSL
Sbjct:  179 YRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSL 224          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM2_ORYSJ (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.023e-11
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  266 YKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSL 394
            Y+P   + RTESA+KFGWFFLFYL+HI FCI+++VAPP  FKGKSL
Sbjct:  174 YRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSL 219          
BLAST of DY270860 vs. ExPASy Swiss-Prot
Match: SCAM4_ORYSJ (Secretory carrier-associated membrane protein 4 OS=Oryza sativa subsp. japonica GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.863e-11
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 2
Query:  266 YKP---SCRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLT 397
            Y+P   + R ESA+KFGWFFLFYL+HI FC++A+V+P I+F GKSLT
Sbjct:  201 YRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILFVGKSLT 247          
The following BLAST results are available for this feature:
BLAST of DY270860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SCAM_PEA1.131e-1374.47Secretory carrier-associated membrane protein OS=P... [more]
SCAM3_ARATH2.133e-1267.39Secretory carrier-associated membrane protein 3 OS... [more]
SCAM1_ARATH2.133e-1264.71Secretory carrier-associated membrane protein 1 OS... [more]
SCAM5_ORYSJ2.786e-1260.38Secretory carrier-associated membrane protein 5 OS... [more]
SCAM6_ORYSJ1.059e-1162.26Secretory carrier-associated membrane protein 6 OS... [more]
SCAM4_ARATH1.806e-1160.38Secretory carrier-associated membrane protein 4 OS... [more]
SCAM3_ORYSJ2.359e-1169.57Secretory carrier-associated membrane protein 3 OS... [more]
SCAM5_ARATH3.081e-1167.39Secretory carrier-associated membrane protein 5 OS... [more]
SCAM2_ORYSJ4.023e-1169.57Secretory carrier-associated membrane protein 2 OS... [more]
SCAM4_ORYSJ6.863e-1163.83Secretory carrier-associated membrane protein 4 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP7YP15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270860 ID=DY270860; Name=DY270860; organism=Citrus clementina; type=EST; length=1232bp
CGCATGTTTACTTTTAGATATTGTTCAGTCACAGAAATAAATCTGATTCA
GTGGCTGTACTTTTGGGTATTTTCTGGATATTGGTATGAAAATTAACAAA
TCTGTCAACAGTGTTACTGTTTATCTTGTTTTCTATCTGTCAGAATGAGT
GAAAATAGACTAAACTCACATGTTTGCCTGAAGCTTTAAAAGAGATTGCA
GTGACAGAGTGTTTGCTGATCAGCTTGCTCTTAATTTGGTTTCTTTCTTG
GTTTTCTTATCACATTATAAGCCTTCTTGCAGGACTGAAAGTGCAATGAA
GTTTGGATGGTTTTTCTTGTTTTACTTGCTCCACATTGGCTTTTGCATAT
TTGCCTCAGTTGCTCCTCCAATAATTTTCAAAGGAAAGTCCCTCACATAA
GTTAATTCAAAATTTTGACCGGTCTTTGCTGCAAATTCGTATTTGACAAT
AACCAACCTACCCCTTGGCATTTATATGCTTTAACTTCTAACCCTAATGC
CGCCATAAGAAAGATATCCACTTACCACCTCTGCTGTAATATCCATCCCC
AACACCGCCAACCGCCCTCATCGTCTAACCTATGCGATCTAATTATTCTG
TAACTATTCTATTCACCCTCCATATCCCACATACCACCAACACTAAACAC
TATAGTCGTTAACCCAACATATTCCTCCTTTATTATCCAATTATTTCTCC
CCCTTTCTAACCCCTTTCCTCTCACAACACTCCTAACCCCTCTCTTCTCC
CGGATCTCACTACTCCCCACCACTTCAATCCATAACTTACTATAACACTA
CACCTAACTCTAAAAACTCATCAAGTGCTATTAACTACATCTAACCGCTA
ACCAACCCAATACCCCTCACAACACGTCCCGAAAACACTCTCCTTATCAT
GCCCCTCTTTCGCTCCACCTTTTCTTTCCGCCTTAATCTCGTATCCACGC
TTATCACTTCCACCTCCCATCCAATTTCCTCACCTCTCACATGCCACTGC
CTCTCCACCACCCCACCCCTCACACGTGCATACTCCTACCACCTCAACCC
AAACACAGCTACACCCACTAACATCTTTCCTTCAACACTCTCTTCATCTA
CACTCACCACCATTCTTCCCAACCACTCATCATCTCCTACTAACTAATAC
ACTCCACCATCATCCTCAACAATCAACCCTACCTATCATTACATTCTACC
AATCCCTTCACACATCCATCACATGCTAACCC
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