DY270882

Overview
NameDY270882
Unique NameDY270882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1058
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270882 vs. ExPASy Swiss-Prot
Match: HBP1C_WHEAT (Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 2.280e-35
Identity = 80/179 (44.69%), Postives = 112/179 (62.57%), Query Frame = 1
Query:  364 TEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKS------PTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTDADTD--EKNQRFDRGQSTAVVASDSSDRSKDKLNQKTLQRLGQNREAARKSPIKEES 876
            T    +Q +R ++LGA   S GFR+ D  N + N + N  K +  A TSDPLQ   + KS       T +    +   V+   L  +K  + NLV++ + N +NWGES+MAD SPRTD STD D D  E+NQ F++GQ  A  ASDSSD+S+DKL+ K+L+RL QNREAARKS +++++
Sbjct:   35 TNVNVMQPSRVADLGALAHSAGFRIEDLANFSTNNLFN-LKPNTHAYTSDPLQFGNYGKSISPTDLATTAAAAAAVTAVDPQALLQQKGVQPNLVALRTHNNDNWGESSMADTSPRTDTSTDPDIDIDERNQMFEQGQLAAPTASDSSDKSRDKLDHKSLRRLAQNREAARKSRLRKKA 212          

HSP 2 Score: 29.6462 bits (65), Expect = 2.280e-35
Identity = 16/35 (45.71%), Postives = 24/35 (68.57%), Query Frame = 2
Query:  854 KAQLRKKAYVQQLEE*LF*SGTTLKQKLQQTKRPG 958
            K++LRKKAY+Q LE       T L+Q+LQ+ ++ G
Sbjct:  205 KSRLRKKAYIQNLESSRL-KLTQLEQELQRARQQG 238          
BLAST of DY270882 vs. ExPASy Swiss-Prot
Match: TGA21_TOBAC (TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.962e-30
Identity = 84/202 (41.58%), Postives = 116/202 (57.43%), Query Frame = 1
Query:  274 GAEDEKEAASGMPSFDSQFSNSEKLVTFDCTEGTTIQSNRGSNLGAFEQSVGFRLGDAVNLTGNTVLNSTKASGQANTSDPLQIVTFDKSPTASNFNLSTIQVESHRLPFEKNHRSNLVSISSGNTENWGESNMADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDK-LNQKTLQRLGQNREAARKSPIKEES 876
            G    +   +GMPSF SQ   S  + T    E     ++R S+ G  EQ +GFR+GD  N+  + + NST A+  A   +     T +++   SN +L T    S  +  +    SNLVS S  + ENWGESNMAD+  RTD STD D D+KNQ  + GQ        SSD+SK+K L+QKTL+RL QNREAARKS +++++
Sbjct:    6 GTAGNRSGTTGMPSFISQIPVSNPMGT----EANNTNTSRMSDFGVLEQYLGFRIGDGANVNRSPLFNSTSATNPAVGFEVSG--TINRTLAPSNTSLPTATPRSQTMLLQ----SNLVSASGTHHENWGESNMADSGSRTDTSTDMDGDDKNQLIEAGQ--------SSDKSKEKVLDQKTLRRLAQNREAARKSRLRKKA 189          
BLAST of DY270882 vs. ExPASy Swiss-Prot
Match: TGA5_ARATH (Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.051e-19
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  673 MADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDKLNQKTLQRLGQNREAARKSPIKEES 876
            M D SPRT +STD DTD  N  FD G    + ASDSSDRSK K++QKTL+RL QNREAARKS +++++
Sbjct:    1 MGDTSPRTSVSTDGDTDHNNLMFDEGH-LGIGASDSSDRSKSKMDQKTLRRLAQNREAARKSRLRKKA 67          

HSP 2 Score: 31.9574 bits (71), Expect = 7.051e-19
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  854 KAQLRKKAYVQQLEE*LF*SGTTLKQKLQQTKRPG 958
            K++LRKKAYVQQLE       T L+Q+LQ+ ++ G
Sbjct:   60 KSRLRKKAYVQQLENSRL-KLTQLEQELQRARQQG 93          
BLAST of DY270882 vs. ExPASy Swiss-Prot
Match: TGA2_ARATH (Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.784e-17
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:  673 MADASPRTDISTDADTDEKNQRFDRGQSTAVV---ASDSSDRSKDKLNQKTLQRLGQNREAARKSPIKEES 876
            MAD SPRTD+STD DTD      D G   A+V   ASDSSDRSK K++QKTL+RL QNREAARKS +++++
Sbjct:    1 MADTSPRTDVSTDDDTDHP----DLGSEGALVNTAASDSSDRSKGKMDQKTLRRLAQNREAARKSRLRKKA 67          

HSP 2 Score: 31.9574 bits (71), Expect = 2.784e-17
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  854 KAQLRKKAYVQQLEE*LF*SGTTLKQKLQQTKRPG 958
            K++LRKKAYVQQLE       T L+Q+LQ+ ++ G
Sbjct:   60 KSRLRKKAYVQQLENSRL-KLTQLEQELQRARQQG 93          
BLAST of DY270882 vs. ExPASy Swiss-Prot
Match: TGA6_ARATH (Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.275e-15
Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1
Query:  673 MADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDKLNQKTLQRLGQNREAARKSPIKEES 876
            MAD S RTD+STD DTD ++   DRG   A  ASDSSDRSKDKL+QKTL+RL QNREAARKS +++++
Sbjct:    1 MADTSSRTDVSTDGDTDHRDLGSDRGHMHAA-ASDSSDRSKDKLDQKTLRRLAQNREAARKSRLRKKA 67          
BLAST of DY270882 vs. ExPASy Swiss-Prot
Match: HBP1B_WHEAT (Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.122e-15
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  673 MADASPRTDISTDADTDEKNQRFDRGQSTAVVASDSSDRSKDKL-NQKTLQRLGQNREAARKSPIKEES 876
            MA+ASPRT+ STD DTDE N   + G +   V SDSSDRS+DK  +QKT++RL QNREAARKS +++++
Sbjct:    1 MAEASPRTETSTD-DTDE-NLMLEPGNAALAVVSDSSDRSRDKNGDQKTMRRLAQNREAARKSRLRKKA 67          

HSP 2 Score: 31.9574 bits (71), Expect = 3.122e-15
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 2
Query:  854 KAQLRKKAYVQQLEE*LF*SGTTLKQKLQQTKRPG 958
            K++LRKKAYVQQLE       T L+Q+LQ+ ++ G
Sbjct:   60 KSRLRKKAYVQQLENSRL-KLTQLEQELQRARQQG 93          
The following BLAST results are available for this feature:
BLAST of DY270882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HBP1C_WHEAT2.280e-3544.69Transcription factor HBP-1b(c1) (Fragment) OS=Trit... [more]
TGA21_TOBAC6.962e-3041.58TGACG-sequence-specific DNA-binding protein TGA-2.... [more]
TGA5_ARATH7.051e-1960.29Transcription factor TGA5 OS=Arabidopsis thaliana ... [more]
TGA2_ARATH2.784e-1760.56Transcription factor TGA2 OS=Arabidopsis thaliana ... [more]
TGA6_ARATH1.275e-1564.71Transcription factor TGA6 OS=Arabidopsis thaliana ... [more]
HBP1B_WHEAT3.122e-1557.97Transcription factor HBP-1b(c38) OS=Triticum aesti... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YA22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270882 ID=DY270882; Name=DY270882; organism=Citrus clementina; type=EST; length=1058bp
GATTGGAAAGCTTGGAACGATCCTCTTTCGAACTCGAACTGGCACAAAAA
ATTAAAAAAAAAAGAAAAAATTAAAAATTAAAAATTAAATAAAGTCATCA
TCATCAGCATCATCAAATCATCATCATCATCAACAACAAAAAAATTCATC
AGCTGGGCTCAGTTCAGACTTTTGCTTGCTTTTTAGGGTAAGAGTGAGGA
GTGCTAATTTATTTCGGAAGACTAAGGGGATTAAAATGATGTCAATGCCT
ACTTAAATAGAGAAGTGAGGCCCGGGGCAGAAGATGAGAAGGAAGCAGCC
AGCGGAATGCCGAGCTTTGATTCTCAGTTTTCCAATTCCGAAAAACTTGT
GACTTTCGATTGCACAGAGGGCACTACAATCCAGTCTAATCGTGGGTCTA
ATTTGGGGGCATTTGAGCAATCAGTTGGATTTCGCTTAGGAGATGCTGTC
AACCTGACTGGAAACACTGTTCTTAATTCAACCAAAGCAAGTGGCCAGGC
AAATACTTCTGATCCCCTCCAAATTGTCACTTTTGATAAGTCACCAACTG
CATCTAACTTCAACCTTTCGACCATCCAAGTGGAGTCTCATAGGCTGCCA
TTTGAAAAGAATCATCGATCAAATCTGGTTTCTATTTCTAGTGGTAATAC
AGAGAATTGGGGAGAATCTAATATGGCTGATGCTAGTCCGAGGACCGATA
TCTCGACAGATGCAGACACAGATGAAAAAAATCAAAGGTTTGATAGAGGT
CAATCCACTGCTGTTGTAGCCTCTGATTCAAGTGATAGATCAAAGGACAA
ATTAAATCAAAAGACTCTTCAAAGACTTGGTCAAAATCGTGAGGCTGCCA
GAAAAAGCCCAATTAAGGAAGAAAGCATATGTTCAACAGTTGGAAGAGTA
GTTGTTTTGAAGCGGAACCACCTTGAAACAAAAGCTTCAGCAAACAAAAA
GGCCAGGGAATCCTTCCAATTAAGCCTCAGGGAAACCAACCCCATTTTAA
GGAGGGGGAAATGGGGACGAGGGCATTTTTGACGGAAAAAAAATGCAAAA
AGGGGCTC
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