DY270906

Overview
NameDY270906
Unique NameDY270906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1073
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.216e-23
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  502 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKASSKI*QKQKNPPLS 894
            E   S   +    K E+    +  R EIE  SPSR DGID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF R+SHA +DR            K E  PRPL DV+  S +I  K K+P  S
Sbjct:   13 ESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINK-KDPGAS 142          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.447e-23
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKASSKI*QKQ 876
            + SR EIE  SPSR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRF++R+SHA +DR            K E  PRPL DV+  S +I  K+
Sbjct:   37 YFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKK 140          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.436e-22
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 1
Query:  502 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKASSKI*QKQ 876
            E   S   +    K ++    +  R EIE  SPSR D ID  +ET+LR SYC F+Q+LG+RL++PQ TI TA++ CHRFF+R+SHA +DR            K E  PRPL DV+  S +I  K+
Sbjct:   13 ESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKK 137          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.179e-22
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  538 SKLEDDE--PVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKAS 855
            S L DDE  P F SR+EIER SPSR+DGID   ET LR SYC F++ LG RL++PQ TI TA+  CHRFF+R+SHA +DR            K E  P  L DV+ AS
Sbjct:   21 SNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIAS 128          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 5.458e-22
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKASSKI*QKQ 876
            + SR EIE  S SR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRFF+R+SHA +DR            K E  PRPL DV+  S +I  K+
Sbjct:   38 YFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKK 141          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 3.537e-21
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKASSKI 864
            + SR+EIERFSPSRKDGID ++E+ LR SYC F+Q LG++L + Q TI  AMV+CHRF++R+SHA +D             K+E +P  L+ V+ AS +I
Sbjct:   35 YFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASYEI 134          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT11_ORYSJ (Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 3.311e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVL 846
            +++RDE+ER SPSR+DG+ A +E  LR +YC+FI+++GLRL+LPQ TI TA +LCHRF++R+SHA ++             K E  P PL  V+
Sbjct:   10 YVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVI 103          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT12_ORYSJ (Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.623e-16
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKAS 855
            + +R+E+E+FSPSRKDGI  + E+ +R  YC+FI+++G+RL+LPQ TI TA++ CHRF++ +S A +              K E  P PL+ V++ +
Sbjct:   19 YFTREELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVA 115          
BLAST of DY270906 vs. ExPASy Swiss-Prot
Match: CCT11_ARATH (Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.633e-16
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  565 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEGKPRPLNDVLKASSKI 864
            + +R+ IE+ SPSR DGI+   ET  R+SY +F+Q LG RL  PQ TI TA+VLC RFF R+S   +D             K EG PRP  DV+  S ++
Sbjct:    8 YNTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVSYRV 107          
The following BLAST results are available for this feature:
BLAST of DY270906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CCT15_ARATH2.216e-2345.80Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT14_ORYSJ6.447e-2350.96Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ARATH1.436e-2244.00Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]
CCT12_ARATH4.179e-2253.70Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=... [more]
CCT13_ORYSJ5.458e-2250.96Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT13_ARATH3.537e-2150.00Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=... [more]
CCT11_ORYSJ3.311e-1947.87Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ORYSJ2.623e-1641.24Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT11_ARATH7.633e-1645.00Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CY... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YC23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270906 ID=DY270906; Name=DY270906; organism=Citrus clementina; type=EST; length=1073bp
CTCTTCACGCGTCCTTTCTCTTGCTTTCGAATTAATAAAAACCTGAAGGA
AACCCCTTCTCGATTTCAATCACGGCGTTTTCTTGATCTCGTTCTCCGTT
AATCATCTGCAGGTACAATGTCTTTTGCACGGAATTATCGCCAACAAGGG
GGCACCTACCATGATAGACATTGGTCTTCTTTCAATAGAGACAACTGCAG
CAGCAATAGCTACAATAACTACAACTACAACCGAAGCTGGAATGACAATC
ACGTTCGAAATTATAACAATTTCCACAGCTATTCAGGGAAATTCAGGGAG
CACTATCAGTATGATAATCCTAGTTACATCACAGCTAGTTATGTTCAACC
TAACAATGCGCCGTCTTTCAAAAGGAGGAAATTTTCAGCCTCTGCATGGG
GAGACAGTGCAAGGAACTATTTGCAAGTGCCTAATGAATATGAGACTGCC
GTTTCATCATCCAACAAGACTTTGGTTCCACCTGTTTCCATTTCCAATAT
TGAGGTGTCTACATCTATGAGCTGTAAACGTGACCGGTCAAAATTGGAGG
ATGATGAGCCAGTGTTTATGTCGAGGGATGAGATTGAGAGATTCTCCCCT
TCGAGAAAAGATGGCATTGATGCACTACGTGAAACACATTTGCGATATTC
ATATTGTGCATTCATTCAAAATCTTGGATTGCGGCTTGAGTTGCCACAAA
CCACTATTGGCACTGCCATGGTTCTGTGCCATCGTTTTTTTGTTCGGCGA
TCACATGCTTGCCATGACAGATTTATAATTGCTACTGCTGCTCTCTTTCT
CGCTGCGAAGTCTGAAGGAAAACCCCGCCCTCTGAACGATGTACTAAAAG
CATCCTCCAAAATTTAACAAAAACAAAAAAACCCTCCCTTGTCCAATCTG
CTTTCCATTGATGGGTTTGAACATTAACGGGAAAGGGGTGAATGAAGGCG
GAACAAATGAAACTAAACAACCTCTAAATTTTGAAACCCAACTTTTCACC
CTCCCATAATGAACCCCTCTTATATTTCCATTTTCCAAAAAAAATTAAGG
TTTTTTCCAAAAAAAGGGTTTTT
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