DY270911

Overview
NameDY270911
Unique NameDY270911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1248
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270911 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.812e-12
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:   62 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 442
            M++Y+R          P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ S  GYQPP
Sbjct:    1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
[Close]
BLAST of DY270911 vs. ExPASy Swiss-Prot
Match: CI023_HUMAN (Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf23 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.396e-11
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:   89 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 442
            P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:   17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
The following BLAST results are available for this feature:
BLAST of DY270911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CI023_MOUSE2.812e-1230.88Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
CI023_HUMAN1.396e-1131.67Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YD11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270911 ID=DY270911; Name=DY270911; organism=Citrus clementina; type=EST; length=1248bp
GGCATAAAAGAAGAAACGTAGCCGTAGAAGAGGGCGCTTTATCTTCAAAG
AGTGAAGAAAGATGGATCGGTACCAAAGAGTGGAGAAGCCAAAAGCAGAG
ACACCGATTGACGAGAATGAAATTCGGATTACGAGTCAAGGGAGGATGCG
CAGCTACATCACTTATGCTATGACTCTGCTTCAGGAAAGAGGTTCCAATG
AGATTGTATTCAAGGCAATGGGAAGGGCTATCAATAAGACTGTAACAATA
GTGGAGCTAATAAAAAGAAGAATTGTTGGCCTTCATCAGAATACAGTTAT
TGGATCCACGGACATAACTGATACGTGGGAGCCTTTGGAGGAAGGGCTTC
TTCCGTTGGAAACCACAAGGCATGTGTCAATGATTACAATAACTCTTTCA
AAGAAGGAACTGAATAGGTCTTCTGTTGGGTATCAGCCTCCACTGCCTGC
TGAACAAGTTAAGCCATTGATAGAATTTGATTATGATGGAGAGGGTTCAC
CTAATGGACCCCGTAGGGGTCGGAGTGGTAGAGGAAGGTCAAGAGGAAGA
GGTATTTTGTGCCACTATGGAATTTCCTGTTACACATGTGCTAGCACACA
TGGACATGACACATACAAGCTTTTATTCCATATGCATTGCATAGGATTCA
TTTTTCTTTTGTATTCTCTTCATTTCTTGCGTTCTTTTGCTTAAAGTAGA
TGGTATTCTACTTGAAGACACATCATCCCTAGTTGTTAAAGTGAGACCTG
AGAATGTTGTGATATACTAGGCTACTGCTTAAATGATCGGTTACAATGAT
AATTTCTGAGGGAACCTTTGATTTTGTTAGTGAGCAAGATGGTAGATGCT
TTAGATGTTCAATCAGGCGAGGTTTCATACCCGTTGGCCTGGCCCTGTTG
GGCCTCTCCGGCCAAAAATCATTTCTTTCCAAAAGCCCTTTCTTTTTTGG
TGTTTTGATAAATATTTTTCCCCGTTATTCTAAATTTCCATTGGCCCCCT
TTTTGAGTTGGCCCCCCTCACAACTGATGAAGGGCGGCCTCCTTTTGCGG
GGTAAGGGTTTTGGGGTTGGCGGAAATTTGAGAAGGGGGGGGTTGGGCCC
CCCAAATAATCGGGGCCTTTTTTAAAAGGGGGGGGGGTGGGAGGGGGAAA
GAAAATTTTTTTTTTGGGGGGCCGCCGGGGGGAAAAAGAAGGGAGAAAAA
AAAGGGGGGGCCCCCCCTTTTTTTTTTGTGTGCGCGGCGAGCGCGCAG
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