DY270912

Overview
NameDY270912
Unique NameDY270912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1171
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 2.001e-89
Identity = 166/223 (74.44%), Postives = 190/223 (85.20%), Query Frame = 3
Query:   99 KPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764
            KPL VSSQLA+ LPILSF GEK+GETYLDLK+A  DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L            E   IVVEEF  KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN RYGV+
Sbjct:   43 KPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGVD 264          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 4.319e-84
Identity = 169/247 (68.42%), Postives = 193/247 (78.14%), Query Frame = 3
Query:   57 IQLAKPN-----SLINLPPKPLIVS------SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764
            I L+ PN      L+   PK L V+      S++A+ +PILSF G ++G T L+LKSA  DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL            ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV  SSRNIGTLKMLTPRTLNLFDILD+E LVLT S VDFLN RYG E
Sbjct:   12 IFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYGDE 255          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.897e-80
Identity = 153/238 (64.29%), Postives = 186/238 (78.15%), Query Frame = 3
Query:   51 KPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764
            KPI L  P+S  +     L + S+L  PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RL             N+ VVEEF   FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTPR+LNLFD+L+AE LV T  T+ +LN RYGV+
Sbjct:   29 KPI-LKLPSSSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVD 262          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.644e-49
Identity = 100/206 (48.54%), Postives = 136/206 (66.02%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 758
            +  + G   GE  LDL +A P+TA  +VHRAL+  + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            E+ IVV++F     RPKTKE + A++RWG++P+QK   L  +++E V  S+RN+ TLK+L    LN+FD+L A+ +V T   +  +   YG
Sbjct:    6 VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNVFDLLYADRIVATTGAIAKIQEVYG 209          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.005e-48
Identity = 100/206 (48.54%), Postives = 135/206 (65.53%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 758
            I  + G ++GET L+L+ A  + A  +VHRAL   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+SIK+N KE+RL            ++ IVVE+F  K  RPKTKE   A+ RWG+ P  K   +V +  + +  S+RNI T+K++   +LN+FD+L+A+ +V T   +  +   YG
Sbjct:    6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNVFDLLNADWIVATVEALGKIQEVYG 209          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.819e-48
Identity = 97/207 (46.86%), Postives = 141/207 (68.12%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            + ++ GE++GET  +L+ A  +TA  +VHRAL+  + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ IVVEEF  +  RPKTK+ + A+ RWG+ P+ KA  ++ E+  ++NV  S+RNI  LK++    LN+FD+L A+ +V+T S ++ +   Y
Sbjct:    6 VKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQLNVFDLLHADKIVVTASALEKIQEVY 210          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.475e-47
Identity = 97/208 (46.63%), Postives = 138/208 (66.35%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764
            + ++ GE++G+  L+L+ A  ++A  +VHR+L   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KEKRL            E+ IV+E+   +F +PKTKE ++A+ RWG+D + K   ++ E  ENV  S RNI  LK++    LN++DIL A+ ++ T + +  +   YG E
Sbjct:    6 VKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNLNIYDILAADKIIATVTAIAKIQEVYGNE 211          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.222e-47
Identity = 95/205 (46.34%), Postives = 135/205 (65.85%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            + ++ GE+IG+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG +P+ K   ++ E  ENV  S+RNI  LK++    LN++D+L A+ +V+T S ++ +   Y
Sbjct:    6 VKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 5.514e-47
Identity = 94/205 (45.85%), Postives = 135/205 (65.85%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755
            + ++ GE++G+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG +P+ K   ++ E  ENV  S+RNI  LK++    LN++D+L A+ +V+T S ++ +   Y
Sbjct:    6 VKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208          
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 9.406e-47
Identity = 93/194 (47.94%), Postives = 133/194 (68.56%), Query Frame = 3
Query:  141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722
            I ++ GE++G+  L+LK A  + A  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV FGPKP+D+++K+N+KE+RL            E+ IVVE F  +  +PKTKE + A+ RWG+D  QK   +V E+++N++ S+RN+  +K+L    LN++D+L A+ +V T
Sbjct:    6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLLKADGLNVYDLLVADKIVAT 197          
The following BLAST results are available for this feature:
BLAST of DY270912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK4_ARATH2.001e-8974.4450S ribosomal protein L4, chloroplastic OS=Arabido... [more]
RK4_TOBAC4.319e-8468.4250S ribosomal protein L4, chloroplastic OS=Nicotia... [more]
RK4_SPIOL2.897e-8064.2950S ribosomal protein L4, chloroplastic OS=Spinaci... [more]
RL4_THEEB2.644e-4948.5450S ribosomal protein L4 OS=Thermosynechococcus el... [more]
RL4_CYAP41.005e-4848.5450S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_NOSP73.819e-4846.8650S ribosomal protein L4 OS=Nostoc punctiforme (st... [more]
RL4_TRIEI2.475e-4746.6350S ribosomal protein L4 OS=Trichodesmium erythrae... [more]
RL4_ANASP4.222e-4746.3450S ribosomal protein L4 OS=Anabaena sp. (strain P... [more]
RL4_ANAVT5.514e-4745.8550S ribosomal protein L4 OS=Anabaena variabilis (s... [more]
RL4_CYAP89.406e-4747.9450S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270912 ID=DY270912; Name=DY270912; organism=Citrus clementina; type=EST; length=1171bp
CATTTTTCTCCTCCACAATCTTCCTCACTTCATCTTCTAACAAAGTTCCA
AAGCCCATTCAACTCGCCAAGCCAAATTCCCTAATAAATCTCCCGCCAAA
GCCACTCATTGTCTCATCTCAACTCGCCTCTCCGCTCCCGATACTGTCCT
TCACAGGCGAAAAAATCGGCGAGACATACCTCGACCTAAAGTCCGCCGCA
CCCGACACAGCGCGTGCGGTTGTCCACCGGGCGTTGATCACCGACATGCA
GAACAAGCGACGCGGCACCGCGTCGACTCTCACGCGCGGGGAGGTAAGAG
GTGGGGGACGGAAACCCTACTCTCAAAAGAAAACGGGTAGGGCTCGTCGC
GGATCGAACAGGACCCCACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACC
CAAGCCGAGGGACTGGTCGATTAAGATAAACAAGAAGGAGAAGCGGCTGG
CGATTTCGACGGCGATAGCGAGCGCCGCGGCGGCGGAGAACACGATTGTG
GTGGAGGAATTTGATGGGAAGTTTGAGAGGCCGAAGACGAAGGAGTTTAT
TGAGGCGATGAGGAGGTGGGGTTTGGACCCGAAGCAGAAAGCGACGTTCT
TGGTGATGGAGGTGAGCGAGAATGTGGAGAAATCGAGTAGGAATATTGGG
ACTTTGAAGATGTTGACGCCGAGGACATTGAATTTGTTTGATATTTTGGA
TGCGGAGACGCTGGTGTTGACGCCGTCAACTGTTGATTTCCTGAATGGCA
GGTATGGGGTCGAGTTCAAGGGAGATGGCGATGAAGAAGAAGAAAAGAAG
TGAACCAGGGGAGCAGGGGAGGAAAGTGGATGCACCAAAAAATGGATTCA
AAGTCTGGGGGCAGTTTTCCCCTTGAATGCCCAAGGGATCCATTTATTGG
CGACACATTTGAATTTAAAGAATTTTTTTTTTTCTTTATATTGCCTAAAC
CAAAAAATTGTGTTAATGGGTGGCGGCGGGAACCTCGATCCAACCCAAAA
TTTTGGGGTAAAATTAATAAGTGGAAAACTTTTTTGGGAATTTTTGGAAA
CTGTGCCCCTCCCAAGGGAAAAAAAAAAAATTGTAAGGAAGTTTTTGTTT
ATTCTATCCCCCCTTTTTGTCAAAATGTTTTATGTGTGCGCATTCTTTTG
GGGGGGGGTTAATAGTTTTTC
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