DY270912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2) HSP 1 Score: 329.717 bits (844), Expect = 2.001e-89 Identity = 166/223 (74.44%), Postives = 190/223 (85.20%), Query Frame = 3 Query: 99 KPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764 KPL VSSQLA+ LPILSF GEK+GETYLDLK+A DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L E IVVEEF KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN RYGV+ Sbjct: 43 KPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGVD 264
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 4.319e-84 Identity = 169/247 (68.42%), Postives = 193/247 (78.14%), Query Frame = 3 Query: 57 IQLAKPN-----SLINLPPKPLIVS------SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764 I L+ PN L+ PK L V+ S++A+ +PILSF G ++G T L+LKSA DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV SSRNIGTLKMLTPRTLNLFDILD+E LVLT S VDFLN RYG E Sbjct: 12 IFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYGDE 255
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1) HSP 1 Score: 299.286 bits (765), Expect = 2.897e-80 Identity = 153/238 (64.29%), Postives = 186/238 (78.15%), Query Frame = 3 Query: 51 KPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764 KPI L P+S + L + S+L PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS +PLRPGGGV+FGPKPRDW+IK+NKKE+RL N+ VVEEF FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTPR+LNLFD+L+AE LV T T+ +LN RYGV+ Sbjct: 29 KPI-LKLPSSSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGVD 262
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 2.644e-49 Identity = 100/206 (48.54%), Postives = 136/206 (66.02%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 758 + + G GE LDL +A P+TA +VHRAL+ + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RL E+ IVV++F RPKTKE + A++RWG++P+QK L +++E V S+RN+ TLK+L LN+FD+L A+ +V T + + YG Sbjct: 6 VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNVFDLLYADRIVATTGAIAKIQEVYG 209
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.005e-48 Identity = 100/206 (48.54%), Postives = 135/206 (65.53%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 758 I + G ++GET L+L+ A + A +VHRAL M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+SIK+N KE+RL ++ IVVE+F K RPKTKE A+ RWG+ P K +V + + + S+RNI T+K++ +LN+FD+L+A+ +V T + + YG Sbjct: 6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNVFDLLNADWIVATVEALGKIQEVYG 209
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 3.819e-48 Identity = 97/207 (46.86%), Postives = 141/207 (68.12%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755 + ++ GE++GET +L+ A +TA +VHRAL+ + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ IVVEEF + RPKTK+ + A+ RWG+ P+ KA ++ E+ ++NV S+RNI LK++ LN+FD+L A+ +V+T S ++ + Y Sbjct: 6 VKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQLNVFDLLHADKIVVTASALEKIQEVY 210
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 2.475e-47 Identity = 97/208 (46.63%), Postives = 138/208 (66.35%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGVE 764 + ++ GE++G+ L+L+ A ++A +VHR+L M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KEKRL E+ IV+E+ +F +PKTKE ++A+ RWG+D + K ++ E ENV S RNI LK++ LN++DIL A+ ++ T + + + YG E Sbjct: 6 VKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNLNIYDILAADKIIATVTAIAKIQEVYGNE 211
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 4.222e-47 Identity = 95/205 (46.34%), Postives = 135/205 (65.85%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755 + ++ GE+IG+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S+RNI LK++ LN++D+L A+ +V+T S ++ + Y Sbjct: 6 VKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 5.514e-47 Identity = 94/205 (45.85%), Postives = 135/205 (65.85%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 755 + ++ GE++G+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S+RNI LK++ LN++D+L A+ +V+T S ++ + Y Sbjct: 6 VKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208
BLAST of DY270912 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 9.406e-47 Identity = 93/194 (47.94%), Postives = 133/194 (68.56%), Query Frame = 3 Query: 141 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 722 I ++ GE++G+ L+LK A + A +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV FGPKP+D+++K+N+KE+RL E+ IVVE F + +PKTKE + A+ RWG+D QK +V E+++N++ S+RN+ +K+L LN++D+L A+ +V T Sbjct: 6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLLKADGLNVYDLLVADKIVAT 197 The following BLAST results are available for this feature:
BLAST of DY270912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY270912 ID=DY270912; Name=DY270912; organism=Citrus clementina; type=EST; length=1171bpback to top |