DY270915

Overview
NameDY270915
Unique NameDY270915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1216
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270915 vs. ExPASy Swiss-Prot
Match: BH093_ARATH (Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.295e-40
Identity = 125/333 (37.54%), Postives = 167/333 (50.15%), Query Frame = 1
Query:   31 MEL-TQHGFLEELLAPPIARRDAWS----SFSGGLN----EYLPSGWILDSL-------DESSTLAAAASNPSSFVGFSAAPSEASFECPPFTDHLHQGYHPFVDGFTVPEVDTSSYTKNEIPSFPSAQEEYPPMVVEEDHDQLCLRSSDHLHQNHSFEETKSSCAEIEQATSNITNQGFNMGLC--VDRKRKNKKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQEEETEFG-----ANQLLIGQFHKLKSNEASVRNSPKFDVERRKTNPGIKFCCHPNQDCCYQT*TPLEVLGLKIPKGV 960
            MEL TQ    EELL P        +    SF+GG +    ++ P+G+ +D L       DE++ L      PSSF+   + P       PP   H      P       P + +S+           A  +YP +   ++       S   + QN   E   +  +       +  ++ F++G C     K+K+KKLEGQPSKNLMAE      LNDRLSMLRSIVPKISKMDRTSILGD IDY+KELL++INKLQ+EE E G      +  L G    L +NE  VRNSPKF+++RR  +  +  CC P       T   LE LGL+I + V
Sbjct:    1 MELSTQMNVFEELLVPTKQETTDNNINNLSFNGGFDHHHHQFFPNGYNIDYLCFNNEEEDENTLLY-----PSSFMDLISQP-------PPLLLHQPPPLQPLS-----PPLSSSATA--------GATFDYPFLEALQEIIDSSSSSPPLILQNGQEENFNNPMSYPSPLMESDQSKSFSVGYCGGETNKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCV 308          
BLAST of DY270915 vs. ExPASy Swiss-Prot
Match: BH061_ARATH (Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.221e-36
Identity = 111/297 (37.37%), Postives = 152/297 (51.18%), Query Frame = 1
Query:  118 LNEYLPSGWILDSL--------------DESSTLAAAASNPSSFVGFSAAPSEASFECPPFTDHLHQGYHPFVDGFTVPEVDTSSYTKNEIPSFPSAQEEYPPMVVEEDHDQLCLRSSDHLHQNHS--FEETKSSCAEIEQATSNITNQGFNMGLCVDRKRKNKKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQEEETEFGANQLLIGQFHKLKSNEASVRNSPKFDVERRKTNPGIKFCCHPNQDCCYQT*TPLEVLGLKIPKGV 960
            +++++P+ W  D L                SS+L    S P   +     PS   ++ PP +       +PF++     ++  SSY+              PP++         L +S     N+S   EE+KS  +  E                 ++KR NKKLEGQPSKNLMAE      LNDRLS+LRSIVPKI+KMDRTSILGD IDY+KELL++INKLQE+E E G+N  L      L +NE+ VRNS KF+V++R+ N  I  CC         T + LE LGL+I + V
Sbjct:   26 IDQFVPNDWNFDYLCFNNLLQEDDNIDHPSSSSLMNLISQPPPLLHQPPQPSSPLYDSPPLSSAFD---YPFLE-----DIIHSSYSP-------------PPLI---------LPASQENTNNYSPLMEESKSFISIGE----------------TNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHL----STLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCV 272          
BLAST of DY270915 vs. ExPASy Swiss-Prot
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.717e-18
Identity = 59/112 (52.68%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  424 SSDHLHQNHSFEETKSSCA-EIEQATSNITN-QGFNMGLCVDRKRKNK-KLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQEE 750
            SS   +   S E  KSS   EI+  ++ I +  G N          NK K +G P+KNLMAE      LNDRL MLRS+VPKISKMDR SILGD IDYLKELL+RIN L  E
Sbjct:  211 SSKMCNSESSSEMRKSSYEREIDDTSTGIIDISGLNYESDDHNTNNNKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTE 322          
BLAST of DY270915 vs. ExPASy Swiss-Prot
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.299e-17
Identity = 50/82 (60.98%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  562 KLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQE--EETEFGANQLLIGQFHKL 801
            K +G P+KNLMAE      LNDRL MLRS+VPKISKMDR SILGD IDYLKELL+RIN L    E T  G+       FH L
Sbjct:  300 KKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLPPTSSSFHPL 381          
BLAST of DY270915 vs. ExPASy Swiss-Prot
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.112e-13
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  541 DRKRKNKKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQEE-----ETEFGANQ 774
            D K K K  +G  +KNLMAE      LNDRL  LRS+VP+I+K+DR SILGD I+Y+KEL     +LQ+E     ETE G+N+
Sbjct:  300 DPKYKKKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEENSETEDGSNR 382          
The following BLAST results are available for this feature:
BLAST of DY270915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BH093_ARATH5.295e-4037.54Transcription factor bHLH93 OS=Arabidopsis thalian... [more]
BH061_ARATH1.221e-3637.37Transcription factor bHLH61 OS=Arabidopsis thalian... [more]
SCRM2_ARATH9.717e-1852.68Transcription factor SCREAM2 OS=Arabidopsis thalia... [more]
ICE1_ARATH6.299e-1760.98Transcription factor ICE1 OS=Arabidopsis thaliana ... [more]
AMS_ARATH1.112e-1351.81Transcription factor ABORTED MICROSPORES OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YD16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270915 ID=DY270915; Name=DY270915; organism=Citrus clementina; type=EST; length=1216bp
CTCTTCATAGAGAAATAAGAACCGGGAGAAATGGAGCTCACTCAACATGG
TTTCTTGGAAGAATTGCTAGCTCCACCAATTGCAAGAAGAGACGCATGGT
CAAGTTTTTCAGGTGGATTGAACGAGTATTTGCCCAGTGGATGGATCCTT
GATTCTCTTGATGAGAGTTCGACTTTAGCTGCTGCTGCATCAAATCCTTC
TTCATTTGTGGGGTTTTCAGCTGCTCCATCAGAAGCTAGTTTTGAGTGTC
CTCCTTTCACTGATCACCTACATCAAGGCTACCACCCTTTTGTTGATGGA
TTCACAGTTCCAGAGGTTGACACGTCATCATACACAAAGAATGAGATACC
TTCATTTCCATCAGCTCAAGAAGAGTACCCGCCAATGGTTGTTGAGGAAG
ATCATGATCAGCTTTGTCTGCGTAGCAGTGATCATCTTCATCAAAATCAT
AGCTTTGAAGAGACAAAAAGTAGCTGTGCTGAGATTGAACAAGCCACTAG
CAACATTACTAATCAAGGTTTCAATATGGGTTTGTGTGTAGATAGAAAGA
GAAAGAATAAGAAGTTAGAAGGGCAGCCTTCAAAGAATCTAATGGCTGAA
AGGAGACGAAGAAAGCGCTTAAATGACCGCCTTTCCATGCTCAGATCAAT
AGTTCCCAAGATCAGCAAGATGGACAGAACATCTATACTTGGAGATACCA
TTGATTACTTGAAAGAGCTTCTGGAGAGAATCAATAAGTTGCAAGAAGAA
GAAACAGAATTTGGTGCAAACCAACTCTTAATTGGGCAATTTCACAAGCT
CAAGTCAAATGAAGCCTCGGTGAGAAATTCCCCCAAGTTTGATGTGGAAA
GGAGAAAAACCAACCCCGGAATCAAATTTTGCTGTCATCCCAACCAGGAT
TGTTGCTATCAAACATAAACCCCTTTAGAGGTTCTAGGCCTAAAAATTCC
AAAGGGTGTTAAAAATTTGCTCCAATGATTTTTTTTTACAAGCCTCTGGT
TCCGGAGGCCCCCTGAGGCGGAAGAAATTTGTTAAATTTTGGAAAAAAAT
AAAACAAGCCTTTGTTTCCTAAAATGGCGGGCCTAGGGAAGAAAAAATTT
TTTGTTAGAGGGGTAGGCGCTGGAAAAAAAATTTTTTTGGTTCCCCCTTG
AAAAAATCTCTGAAAAAATAATATATAATTTTTTTTCTTTATATTTTTTT
TTCTCCTCCCTCGAAG
back to top