DY270927

Overview
NameDY270927
Unique NameDY270927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY270927 vs. ExPASy Swiss-Prot
Match: Y5986_ARATH (Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.644e-17
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  454 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILGGGGQN--KLTLPKVFIGGRYIGGVEEVR 693
            +RVV+YFTSLR +R T+EDC  +R IL+   +++DERD+SM S F +EL+ +L G   N   +TLP+VF+G +Y+GGVEE++
Sbjct:  225 ERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIK 306
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BLAST of DY270927 vs. ExPASy Swiss-Prot
Match: Y3885_ARATH (Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.809e-14
Identity = 42/85 (49.41%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:  454 QRVVVYFTSLRVVRSTFEDCKAVRSILRGFRVQLDERDLSMDSSFLNELQGILG-----GGGQNKLTLPKVFIGGRYIGGVEEVR 693
            +RV++YFTSLR +R T+E+   VR IL+   +++DERD+SM S F +EL+ +LG     G G   +TLP+VF+G +YIGG EE+R
Sbjct:  251 ERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFNKGVG---ITLPRVFLGRKYIGGAEEIR 332
The following BLAST results are available for this feature:
BLAST of DY270927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5986_ARATH6.644e-1751.22Uncharacterized protein At5g39865 OS=Arabidopsis t... [more]
Y3885_ARATH1.809e-1449.41Uncharacterized protein At3g28850 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YE13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270927 ID=DY270927; Name=DY270927; organism=Citrus clementina; type=EST; length=1270bp
TCCCTTTTTCCCCCTTCAATCAAACTCAAAATCACACCCTACTAAAGTTT
CAAACTTTCTTCATTCTTCCTGTACAATTGCTCTTTACAAACCCAAGAAA
AAATAATCAAATCAATGTGGCGGTCGTATATTACATCACCGGTTAAAATT
CACAGCACGTCATCACATTCACATTCGTCATTCCACTGCTCGTCCTTCAA
AGATATCCAGAGCCTCTGTACAGACGATCCCACCCCCCTTCACAATAACA
ATAACAACAATAATACATCGAGAAAGCCCTCTGTTTTCCACCGGGCCCGA
ATCGTCCACGCCTTTATCCTCTCCTTGAAACCCGAAAGTGAATCCCCATT
TAAACGCGAGCCCAAAAATGAGACGTCGGCAGACGAAAATAACAAATATT
CGCTACAAGTTCAGCAGCAGCAGCAACCGACGATCAGGATCCCGGGAGCG
GACCAACGCGTTGTCGTATACTTCACGAGCCTGCGAGTCGTACGGTCGAC
CTTCGAAGACTGCAAGGCCGTCCGATCTATTCTCCGTGGATTTCGCGTGC
AACTCGACGAGCGGGATCTTTCCATGGACTCGAGTTTCTTGAACGAATTA
CAAGGAATCCTCGGCGGCGGTGGTCAAAACAAGTTGACTCTGCCTAAGGT
TTTTATCGGCGGCAGGTACATCGGTGGAGTGGAGGAAGTCAGGGCAACTT
AACGAGACCCGGAAAGCTGAATAATTTCTCCTAATGGTTAGCTGGTCTGC
AAACTCAGCAAGTTTAAATATTCTGGAAATTATAAATACTATTTTGACTG
AGTTTTAAAATGTAACCACTTAAAATTTAGATCCTGAAAAGCTGCTACTT
TATGGTGGTATTTGACCTCACATGTTGAACAAATACATATTAAATTAACT
ATTTCACTATCTGTACATTTAATATCGAATCTCTTATCTTGATAACTCTC
AAAATCGCGTTTATCTAAATATTATTATAAATTATTATAAATGACATATA
TCCACACCTAACTATCCTAATAATAGTGATACGAAAGAATATGCACTCAC
AGCTTTAAATGGACCGTTATGTATATATTTAACTTGCTAAGCACCATCGA
TACCATTCTAAGGAACAGTCTAATACGTGTAAATTATGAATAAAATCCTC
CATATATTATTTATGAATTTCTGGAATACTTACTTTTCTACATTCAATAT
AATTAAATTTTATCATACTATTATTTTTATATATTACTTATTTATCCTAA
ATGTAAAATTCACTCATACC
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