DY270932

Overview
NameDY270932
Unique NameDY270932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1258
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of DY270932 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.920e-33
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVESSDTIDNV AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of DY270932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_WHEAT2.920e-3398.65Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN2.920e-3398.65Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU2.920e-3398.65Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC2.920e-3398.65Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR2.920e-3398.65Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA2.920e-3398.65Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ2.920e-3398.65Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY2.920e-3398.65Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE2.920e-3398.65Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO2.920e-3398.65Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270932 ID=DY270932; Name=DY270932; organism=Citrus clementina; type=EST; length=1258bp
CATCTGCAGCCCCTTTTATCTTCGTGAAAACCCTAACGGGAAAGACCATA
ACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCTAGGCCAAGAT
CCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCG
GAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAG
GAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCG
TAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAATA
AGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAG
GTCCAGAGGCTGAAGAAGGAGTCGTCAAATGCTCAGCGTGCTACCCCGCA
TCGACCTGCTTTACCACCTTGGCAAGGATTTACGGCCGGACGTGTGTCTT
AACCTTTACTTTGAAATAAAAGGCTTCTATATCTGATTATGACTATTAAA
GTATTTGGTGCCTTGTTGGACAGCTATAGTGGAAATAGAAAGATGTTGGA
CTCATTTAGCCCTTATTTTCTTGTTCTATGAATGCATTCGAGGGCTTCCA
CAACCATGCCTGCCATTTCCGCTTACCTGGTGGTTTGGACCTCTTTTGTT
AGTTGTTCCTCTTTTGTTTTTTCCCGACCGGGGATTTTTGTATTGCCTCC
GCTCGTTGCTTATTTCGGGCCCTCCTCTTCTCCTGTTTTTTATTTTTCTG
TTATGTTAGTTATTGTTTTTGTATTTTATCATTCTTCATTTTTTTCTTTT
CTCTCTTATTTTTTTCCTAATGACTTTTATTTATTTAACTGATTGTTGAC
TGCATCGGATTCTTTTGCTTCCTTAATCCTCTGAGCATATCTGACTCATA
TTATGTTCTGTGGATTATATATGATTGTTCTTTAGCCAATTCGCTCTCCA
TCTCTTAGTGCGATAGCGGTTTCTTGTGAGGTTATGCTGTTCTTTGATGT
GATATTAAATAGTACGATATAACTAGGATTTAATTATTTATATTCTTATA
TTGCCTCTAATAACATAATTTACTAGAATATAAATACATATAATATTCTG
TGGCAATTCGACTTGTTTGATCTTATCTGTATAATAATATAGACTCCAAT
CTTACTTAATTCTTTTTTGTTATGGTTTGCCTAAGTCTATATTCTGTGCT
GCTCTTTCGTCCCTTCCTACTGCTTTGTACTAGCTCTCTTTTTTGTATTT
TTTTCTAC
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