DY270998

Overview
NameDY270998
Unique NameDY270998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1277
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270998 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.958e-23
Identity = 54/159 (33.96%), Postives = 83/159 (52.20%), Query Frame = 2
Query:  326 INKSNDLSVRIFLPRQALDSSS----------STNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADL-TSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSP 769
            ++ + +L  RI+ P   L  +           ST +I +PV+++FHGG F   S  +++   FC  + +    VVVSVDYR +PEHR P A+DD   AL+W+ +    W+ +  D     +L G S+GGNI +   +RA  E      +K+ G IL  P
Sbjct:   69 VDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEI-VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSR--VWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEG-----VKVLGNILLHP 219          

HSP 2 Score: 45.4394 bits (106), Expect = 2.958e-23
Identity = 21/54 (38.89%), Postives = 27/54 (50.00%), Query Frame = 3
Query:  762 IHPFFGGLNRTESELRLENNMHLPLCVNDLRWELAFTIGGDRGHEYCDPTGGRG 923
            +HP FGG  RT+SE  L+    + +   D  W      G DR H  C+P G RG
Sbjct:  217 LHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRG 270          
BLAST of DY270998 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.013e-23
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  311 SKDVTINKSNDLSVRIFLPRQALDSSSSTNKIK------LPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYAD-LTSCFLMGTSAGGNIVYYAGLRAAAEADNML 733
            S DV I++  +L  R++ P  A  S S T+         +PVIV+FHGG F   S  +++    C  +     AVVVSV+YR APE+R P A+DD    L W+      W+ +  D     FL G S+GGNIV+   +RA     ++L
Sbjct:   65 SFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV--NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL 210          

HSP 2 Score: 43.1282 bits (100), Expect = 5.013e-23
Identity = 21/53 (39.62%), Postives = 26/53 (49.06%), Query Frame = 3
Query:  762 IHPFFGGLNRTESELRLENNMHLPLCVNDLRWELAFTIGGDRGHEYCDPTGGR 920
            ++P FGG  RTESE RL+    + +   D  W      G DR H  C P G R
Sbjct:  215 LNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPR 267          
BLAST of DY270998 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.713e-21
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  413 PVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADLTS-CFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLIL 760
            PVI++FHGG F+  S  +++    C         VVVSV+YR APEHR P A+DD   AL W+++    ++ +  D  +  FL G S+GGNI ++  +RAA E      +K+ G IL
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS--QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG-----VKVCGNIL 223          

HSP 2 Score: 40.817 bits (94), Expect = 5.713e-21
Identity = 20/54 (37.04%), Postives = 26/54 (48.15%), Query Frame = 3
Query:  762 IHPFFGGLNRTESELRLENNMHLPLCVNDLRWELAFTIGGDRGHEYCDPTGGRG 923
            ++  FGG  RTESE RL+    + L   D  W+       DR H  C+P G  G
Sbjct:  224 LNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNG 277          
BLAST of DY270998 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.769e-20
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  266 VAATLDPDDHQTIAVSKDVTINKSNDLSVRIFLPRQA--------LDSSSSTNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYAD-LTSCFLMGTSAGGNIVYYAGLRAAAEADNML 733
            V A  +P D      S DV I++  +L  R++ P  A        LD     +   +PVI++FHGG F   S  +++    C  +      VVVSV+YR APE+  P A+DD   AL+W+      W+ +  D     FL G S+GGNI +   LRA     ++L
Sbjct:   53 VTANANPVDG---VFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV--NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL 212          

HSP 2 Score: 40.817 bits (94), Expect = 2.769e-20
Identity = 20/54 (37.04%), Postives = 27/54 (50.00%), Query Frame = 3
Query:  762 IHPFFGGLNRTESELRLENNMHLPLCVNDLRWELAFTIGGDRGHEYCDPTGGRG 923
            ++P FGG  RTESE  L+    + +   D  W+     G DR H  C+P   RG
Sbjct:  217 LNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRG 270          
BLAST of DY270998 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.462e-11
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  341 DLSVRIFLPRQALDSSSSTNKIKLPVIVYFHGGGFILFSVGTSMTHDFCSN-IASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNY-ADLTSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLILHSPFL 775
            D+ VR++LP++  ++       +   ++YFHGGGF  F        DF +   A+   AVVV VDYRLAP+H  PA  +D + A+ + +   ++ +T Y  D T   + G S+GGN+     +    + D  +  KIK  +L  P L
Sbjct:   88 DIPVRLYLPKRKSET-------RRRAVIYFHGGGFC-FGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFFLL--EKILTKYGVDPTRICIAGDSSGGNLA--TAVTQQVQNDAEIKHKIKMQVLLYPGL 222          
BLAST of DY270998 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.199e-11
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  413 PVIVYFHGGGFILFSVGTSMTHDFCSNIASEFPAVVVSVDYRLAPEHRLPAAHDDAMEALHWIITTHDEWITNYADLTSCFLMGTSAGGNIVYYAGLRAAAEADNMLPLKIKGLIL 760
            P  ++FHGGG++L ++ T   + F +++  +   VVV+VDYRLAPE   PA  DD  EAL +     D    N   +    + G+SAGGNI      + AA   N  PL ++ L++
Sbjct:  101 PCFLWFHGGGWVLGNINTE--NSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLGINPNKIA---VGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVV 211          
The following BLAST results are available for this feature:
BLAST of DY270998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GI1L2_ARATH2.958e-2333.96Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH5.013e-2336.49Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ5.713e-2139.32Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH2.769e-2033.33Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
ADCL2_HUMAN2.462e-1132.65Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
YFZ3_SCHPO4.199e-1136.21AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YI08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270998 ID=DY270998; Name=DY270998; organism=Citrus clementina; type=EST; length=1277bp
CACACTAGTGCATTATGAATATATGAGTATTTTAAAGCCTACCAAGTATT
TACTTATGCTTGGCGTCAAGAAACGAAAAATAAGAGAGAATTGATCACCG
CCCATCAAGTTTCAGTTTCATTACATTCACAGAGCAAACCCTAATATGTC
AGATAAGTTTGCCCTCCCACATTCCATTGATCCCTATCTATACCTTCAGA
TCACCCCTAACGATGATGACACCCTCACTCGCAACTACAGCAATCTCCCA
AGTAGCCTACAAATGGTAGCCGCTACACTTGATCCTGATGATCACCAAAC
AATAGCTGTCTCCAAAGATGTTACCATCAATAAATCAAACGACCTTTCTG
TCCGCATATTCCTGCCCCGTCAAGCACTTGATTCTTCCTCTTCCACCAAT
AAAATTAAGCTACCTGTCATCGTTTACTTTCACGGTGGAGGGTTCATTCT
CTTCAGCGTTGGCACAAGCATGACTCACGATTTCTGCTCAAACATAGCAT
CCGAATTCCCTGCTGTAGTTGTATCAGTTGACTACAGGCTAGCCCCCGAG
CATCGTCTCCCGGCGGCTCATGATGATGCCATGGAAGCCTTGCACTGGAT
CATAACCACCCATGATGAGTGGATAACGAACTATGCTGACTTAACTTCAT
GTTTCTTAATGGGCACTAGTGCTGGCGGTAACATAGTTTATTATGCAGGG
CTACGTGCAGCTGCAGAAGCTGATAATATGTTACCATTGAAGATCAAAGG
GCTGATATTGCATTCACCCTTTCTTTGGTGGGCTCAATAGGACTGAGTCA
GAGTTGAGGCTGGAGAATAACATGCATCTCCCTTTATGTGTTAATGATTT
GAGGTGGGAGTTAGCTTTTACCATTGGGGGTGACCGGGGTCATGAATATT
GTGATCCAACGGGGGGGAGGGGGGTCAAAGCTCCTTAAAGCAAATCAAGT
TGCTAAGAAGGAAGGGAAAGGGGACTGGGTGTGAAGGGGGAACCCTTTGA
TTGCCCCTCCAAATGGAACCTTGCAAAAATTTTAAAACAAAAAAGGGGGT
TCCAGGGGGGGGGTTCTTTTTGGTTGAAAGGGGGTTTTTCTTTTTTCTGG
GGAAATTTTAAAAACCCTTTTCAAAAAAAACCCCAATTTTTTTTGTTTTT
GGCAAAAAGAGGATTTTTTTTTTTTTTTTTCCCCCCAACCAGGGGGCCGC
CCCCCGGCGGCCCACCAAGGGGAGAGAAACCGGGTGGGAGGGAGGGAGAA
AGAGGAGGCACAGCAAGAGGGTTGTGT
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