DY271029

Overview
NameDY271029
Unique NameDY271029
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271029 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.770e-24
Identity = 70/112 (62.50%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:  472 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASF*IWEVWKPQQLWSLRKKIVHLRGADH-LGIGIREWGQPSQVLALVPAGG 804
            L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SF       P  +  L  KI  L GA+  L +          +LALVPAGG
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTV-VLEDKISALEGAESTLVMASGMCASTVMLLALVPAGG 272

HSP 2 Score: 70.8626 bits (172), Expect = 1.576e-11
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  130 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 315
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of DY271029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH2.770e-2462.50Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YJ22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271029 ID=DY271029; Name=DY271029; organism=Citrus clementina; type=EST; length=1120bp
GTTCTTATCATACATTACAGAGAGAGCAAAGCCGCCGTTCAATACGACGT
CGTAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCCTTCTCTT
CTTCTTGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTCGGGCTCG
GCTCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCGGAGCGTC
GACGGCGTCGTTTAGCGGCCTGTCGTCTCTGATTTTCAGGTTTCCGCCGA
ACTTCGTGCGCCAGCTTAGCACGAAGGCCAGGAGGAACTGCAGCAACATC
GGCGTGGCGCAAATCGTGGCGGCTTCGTGGTCGAACGGTGTGGGTTCCGG
CTCTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCCCCGCCCG
TCCCCGTCGAGATTACGAGCGGCGATGACATCGCGCTTGTTGACGGATTG
AAAAATGTACATCTGGAGGCCCTCGCTGATTTGAAAAACGAGGCTTCGTT
TTTGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTGAAAGATTAGGTC
GTGGTATAGTAACAGATGCAATTACTACCCCAGTGGTGAATACTTCTGCT
TACTTCTTTAAGAAAACTGCTGAGCTTATTGATTTCAAGGAGAAACGTCG
TGCAAGTTTTTGAATATGGGAGGTATGGAAACCCCAACAACTGTGGTCGT
TGAGGAAAAAAATAGTGCACTTGAGGGGGGCGGATCACCTTGGAATAGGG
ATCCGGGAATGGGGCCAGCCCAGTCAGGTTTTGGCATTGGTTCCTGCCGG
TGGGGCTTTTTTGGGACAACCCTTGGTTGGCATCGGAAAAATAGGGTTTT
CTATGGAATCGGTTCCAGCCCAAAAAAGGGAAAATCCTGGTTCAGATTAT
TTGACCCCACCTTATTCTGAAAGGTTATGATAACAAGACCAATTAAAATA
AATTAGTTCTCCTGTTTCTCTCTACTGGTTTTCTCGTTCCAATGTTATTT
GTCTAATTGTGTTTGAGATTTGTAATCGTGGCATATTAGTCTTTTACCCA
GAGAACACGATATGTTATCATCTTTTTGTTTTGAAGAAGGTACTCCCTTG
TTACCATCCTTCCTCTCATT
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