DY271042

Overview
NameDY271042
Unique NameDY271042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            VTGA KYLKE NP IKLYGVEP+ESA+LSGGKPGPHK   IGAG +PGVL+
Sbjct:  189 VTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLD 239          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.292e-16
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TGA KYLKE NP +KLYGVEPIESA+LSGGKPGPHK   IGAG +P VLE
Sbjct:  186 ITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGFIPSVLE 236          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TG+ KYL+E NP +KLYGVEP+ESA+LSGGKPGPHK   IGAG +PGVLE
Sbjct:  189 ITGSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLE 239          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.993e-16
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TGA KYLKE NP +KLYGVEP+ESA+LSGGKPGPHK   IGAG +P VLE
Sbjct:  188 ITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPNVLE 238          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TGA +YL+E NP+IK+YGVEP+ESAVLSGGKPGPHK   IGAG +PGVL+
Sbjct:  186 ITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIGAGFVPGVLD 236          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            VTG  KYLKE NPEIK+YGVEP ESA+LSGG+PGPHK   IGAG +PGVL+
Sbjct:  189 VTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLD 239          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.940e-15
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TGA KYLKE NP++KL G+EP+ESAVLSGGKPGPHK   +GAG +PGVL+
Sbjct:  189 ITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLD 239          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TG  +YL+E NP +KLYGVEP+ESAVL+GGKPGPHK   IGAG +PGVL+
Sbjct:  189 ITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLD 239          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVLE 154
            +TG  KYL+E NP IKLYGVEP ESA+L+GGKPGPHK   IGAG +PGVL+
Sbjct:  190 ITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLD 240          
BLAST of DY271042 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 VTGARKYLKEHNPEIKLYGVEPIESAVLSGGKPGPHKNPRIGAGLLPGVL 151
            +TGA KYLKE N  +KLYGVEP+ESA+LSGGKPGPHK   IGAG +P VL
Sbjct:  186 ITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVL 235          
The following BLAST results are available for this feature:
BLAST of DY271042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CYSK_CITLA7.877e-1778.43Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK1_BRAJU2.292e-1676.47Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_SOLTU2.993e-1672.55Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK2_BRAJU2.993e-1674.51Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ORYSJ5.106e-1672.55Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK2_ORYSJ8.709e-1674.51Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_SPIOL1.940e-1570.59Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_MAIZE3.309e-1568.63Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK_WHEAT5.645e-1570.59Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK1_ARATH9.629e-1572.00Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YK11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271042 ID=DY271042; Name=DY271042; organism=Citrus clementina; type=EST; length=609bp
TGTCACTGGTGCAAGGAAGTATCTCAAAGAGCATAATCCTGAAATTAAGC
TCTATGGCGTTGAACCAATTGAAAGTGCTGTGCTGTCGGGAGGGAAACCT
GGTCCCCATAAAAATCCAAGAATAGGTGCTGGCCTTCTCCCTGGAGTTTT
GGAACGCAATTTACTAAAATGAAACTGGTCCAAAAACAAGGGAAAAAAAC
TATTGAAAATGGGAAACTTCCTGGACTTTAAAAAAGGATTGGTGGGTGGG
GAAATCCTCCGGAACCCGCCTACTGGACCCGTCCAATTCTGAAAAAAAAA
AAAGAGCCAAAAATGGTGGGAAAAACCTATTGGGGGGGTTCTTCTCCCAG
CTTTTCGGAAAACGAATCCCCCCCCTCTTTGTTTTTTTTTTCAATTCTGT
CAAAAAAAGAGAAGGCGAAGAAAACAGAGTTTTTTTAACACCCGGGTAAA
AAACCCCCCTAAAACTCTCTTTGTTAGCCTCCCCCACCTCCCCCTGTTTT
CTGTAGGGTGGAAGTAAAACACAGCCTTGATTGTTTATTATAAAACACTA
AAAAAAAATCTCTTTCTTTGTTATGATGGGTGTTGGGATGAGTGGATATT
ACTCTTATT
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