DY271043

Overview
NameDY271043
Unique NameDY271043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1239
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271043 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 5.079e-22
Identity = 71/162 (43.83%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  583 SMLKTLERYQKCNYGAPEPNVSAREALELSTQQKYLKL*ARNEALQRFPKESPLEKYLAPLKSKKL*IHLKGSLDRSLKPNKTTKTH*LRNPLTELEKKGTVADRXXXXXXXXXXXXENTVKTLSIYIPMEKIVGYGAKTTPTLRAKNPSFRPLKCKPNIKI 1068
            SMLKTLERYQKCNYGAPE N+S REALE+S+QQ+YLKL AR EALQR  + + L + L PL SK+L   L+  LD SLK  ++T+T  + + L +L++K    +             E +   L  +    + VGYG + T T    +  F PL+C+P ++I
Sbjct:   62 SMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQR-SQRNLLGEDLGPLNSKEL-ESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNE--ANRTLKQRLMEGSTLNLQ-WQQNAQDVGYGRQATQT--QGDGFFHPLECEPTLQI 216          
BLAST of DY271043 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.251e-20
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 1
Query:  583 SMLKTLERYQKCNYGAPEPNVSAREALELSTQQKYLKL*ARNEALQRFPKESPLEKYLAPLKSKKL*IHLKGSLDRSLKPNKTTKTH*LRNPLTELEKK 879
            SMLKTLERYQKCNYGAPEPN+S REALE+S+QQ+YLKL  R EALQR  + + L + L PL SK+L   L+  LD SLK  ++T+T  + + LT+ ++K
Sbjct:   62 SMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQR-SQRNLLGEDLGPLNSKEL-ESLERQLDMSLKQIRSTRTQLMLDQLTDYQRK 158          
BLAST of DY271043 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.449e-18
Identity = 64/164 (39.02%), Postives = 92/164 (56.10%), Query Frame = 1
Query:  583 SMLKTLERYQKCNYGAPEPNVSAREAL--ELSTQQKYLKL*ARNEALQRFPKESPLEKYLAPLKSKKL*IHLKGSLDRSLKPNKTTKTH*LRNPLTELEKKGTVADRXXXXXXXXXXXXENTVKTLSIYIPMEKIVGYGAKTTPTLRAKNPSFRPLKCKPNIKI 1068
            SML+TLERYQKCNYGAPEPNV +REAL  ELS+QQ+YLKL  R +ALQR  + + L + L PL +K+L   L+  LD SLK  +  +T  + + L +L+ K  +               +     L +    E++  YG       +     F+PL+C+P ++I
Sbjct:   62 SMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQR-TQRNLLGEDLGPLSTKEL-ESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTE--TNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQI 221          
BLAST of DY271043 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.884e-17
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 1
Query:  583 SMLKTLERYQKCNYGAPEPNVSAREA--LELSTQQKYLKL*ARNEALQRFPKESPLEKYLAPLKSKKL*IHLKGSLDRSLKPNKTTKTH*LRNPLTELEKKGTVADRXXXXXXXXXXXXENTVKTLSIYIPMEKIVGYGAKTTPTLRAKNP-SFRPLKCKPNIKILKNHPGGP 1092
            SMLKTLERYQKCNYGAPE NV+++EA  LELS+QQ+YLKL AR E+LQR  + + + + L PL SK L   L+  LD SLK  ++T+T  + + L +L++K  +               +  + +L + +  E  +GYG               +P++C+P ++I   H G P
Sbjct:   62 SMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQR-SQRNLMGEDLGPLSSKDL-ETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQ--INSLQLNLSAED-MGYGRHHQGHTHGDELFQVQPIECEPTLQI-GYHQGDP 228          
BLAST of DY271043 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.189e-16
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  583 SMLKTLERYQKCNYGAPEPNVSAREAL--ELSTQQKYLKL*ARNEALQRFPKESPLEKYLAPLKSKKL*IHLKGSLDRSLKPNKTTKTH*LRNPLTELEKK 879
            SM++TLERYQKCNYG PEPNV +REAL  ELS+QQ+YLKL  R +ALQR  + + L + L PL +K+L + L+  LD SLK  +  +T  + + L +L+ K
Sbjct:   62 SMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQR-TQRNLLGEDLGPLSTKELEL-LERQLDSSLKQIRALRTQFMLDQLNDLQSK 160          
BLAST of DY271043 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.649e-14
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  535 GLMYSFSLITPCENLISMLKTLERYQKCNYGAPEPNVSAREALELSTQQKYLKL*ARNEALQRFPKESPLEKYLAPLKSKKL*IHLKGSLDRSLKPNKTTKTH*LRNPLTELEKKGTVADRXXXXXXXXXXXXENTVKTLSIYIPME-KIVGYGAKTTPTLRAKNPSFRPLKCKPNIKI 1068
            G +Y F   T      SMLKTLE+YQKCN+G+PE  + +RE    S+QQ+YLKL  R EALQR  + + L + L PL SK+L   L+  LD SL+  ++T+T  + + L +L+++  +                +      ++ P     VGYG +  P        + PL+C+P ++I
Sbjct:   52 GKLYEFCSST------SMLKTLEKYQKCNFGSPESTIISRET--QSSQQEYLKLKNRVEALQR-SQRNLLGEDLGPLGSKEL-EQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCE-ANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQ--PAQHHGEAFYHPLECEPTLQI 217          
The following BLAST results are available for this feature:
BLAST of DY271043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AGL9_PETHY5.079e-2243.83Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL9_SOLLC1.251e-2057.58Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP3_ARATH4.449e-1839.02Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA2.884e-1738.73MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_SINAL3.189e-1651.49Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE6.649e-1434.08Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YK12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271043 ID=DY271043; Name=DY271043; organism=Citrus clementina; type=EST; length=1239bp
CTTCTTTTTCTTTCTCTCCCATTCTAATTTAAAACTCATCAATAATTACC
TTGCCAGTGCAAACACTAGCTAGTGACTGATGTTCAAGTCCATGCATTTG
TGGAGGGTTAATAATGTATTCCTTTTTTTCATTAATAAATTTTATGCAGA
TGGAAACAAGGAAACATAATACTAGAAACTGAATATTTATTTTTCTATCA
AATTGTTTCCTAAGAACTGAAACGGGCCCTAAAGCATGAACCAAACCGAT
CCTATTGAGGTTCCAAAATTTTCTTCCTTCCTTTCCAGTTTCACCCAATA
TATATTAATCTATTGTGTGGTTTCATTCAAAGTCAAAATTGTTTTTGGTA
TAACCTTTCATGCAATAGTTTTCAATTATTTGTTCTCTCATTGTGATTGA
TTGTTCAGTAATAATAGTTAATATAACTATCAGTGCGTGAGTGCGTTCAT
TTAATTTGATGTGTTATATAATGCCTTTTTTTTTTTTTCAATTCATCTTT
CATTGTTGACTAATATATTTATGCAATTTGCGGAGGGCTAATGTATTCCT
TTTCTTTGATAACCCCATGCGAAAATTTAATTAGCATGCTCAAAACGCTT
GAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGC
AAGGGAGGCCCTGGAGCTAAGTACCCAGCAAAAATATCTGAAGCTTTAAG
CACGAAATGAAGCCCTACAAAGATTCCCAAAGGAATCTCCCTTGGAAAAA
TACCTTGCCCCTCTAAAAAGCAAAAAACTTTGAATCCACTTGAAAGGGAG
CTTGGATAGGTCATTGAAACCAAATAAAACAACAAAAACTCATTAATTGC
GGAATCCCCTTACTGAACTGGAAAAAAAGGGAACAGTTGCTGACCGAAAC
AAAAAAAAACCCCCAAACAAAGGTTGAGGGAAAGAAAACACAGTAAAAAC
CCTTTCCATTTATATCCCAATGGAAAAAATTGTGGGTTATGGGGCTAAAA
CCACCCCAACCCTCCGAGCCAAAAACCCTTCTTTCCGCCCCTTGAAATGT
AAACCCAACATTAAAATATTGAAAAACCACCCCGGGGGACCCCCATTATT
CAGTTTGGCTCACACACGGCCCCCGAATTCCTAAATAAATTTTCGTCGAG
AGGGGGGGCTTCACCACTCGTAAAAAGAAAACCGGGGGGCGCAATTATCC
CACCTATATGGTGTTTTGTTGGTAGTTTTTTATTTCCTA
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