DY271052

Overview
NameDY271052
Unique NameDY271052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1197
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.097e-41
Identity = 94/190 (49.47%), Postives = 121/190 (63.68%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGPKIF Q S S F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPT+FPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMITTPNETNRPFAAAKDIVPFYFEHGPKIF-QSSGSIF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTFFPPHYFAT 201          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.969e-41
Identity = 93/190 (48.95%), Postives = 119/190 (62.63%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI        LGP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   14 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------LGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHYFVT 189          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT07_SOLTU (Patatin-07 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.041e-40
Identity = 91/187 (48.66%), Postives = 118/187 (63.10%), Query Frame = 3
Query:   42 ITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   29 VTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFAT 201          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.041e-40
Identity = 89/190 (46.84%), Postives = 119/190 (62.63%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFAT 202          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT03_SOLTU (Patatin-03 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.359e-40
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++   +   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLARSPELDAKMSDICYSTAAAPTYFPPHYFAT 202          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT13_SOLTU (Patatin-13 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.319e-40
Identity = 89/190 (46.84%), Postives = 118/190 (62.11%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  +  E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSVDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVPQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFAT 202          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.955e-40
Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPH+  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHHFVT 201          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.165e-40
Identity = 91/190 (47.89%), Postives = 118/190 (62.11%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GT TGGL+T M+T PN+   PF+AAKDI  FY +HGPKIF     S F           L+ PKYDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  +    +A++ DIC ST+AAPTYFPPHY  T
Sbjct:   14 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFEP---SGFH----------LVEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYFPPHYFAT 190          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.746e-40
Identity = 89/190 (46.84%), Postives = 119/190 (62.63%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M++ PN+   PF+AAK+I  FY EHGP+IF    +              +LGPKYDGKYL  ++ E LG+  V + LT VVI +FDIK  +PVIF+ ++   +   +A++ DI  ST+AAPTYFPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQ--------------ILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVT 201          
BLAST of DY271052 vs. ExPASy Swiss-Prot
Match: PT2K2_SOLTU (Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.151e-39
Identity = 91/190 (47.89%), Postives = 117/190 (61.58%), Query Frame = 3
Query:   33 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNELLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLET 599
            G+ +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP YDGKYL  ++ E LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAVILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIIPFYFEHGPHIF------NYSGSI--------FGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPMYFPPHYFIT 201          
The following BLAST results are available for this feature:
BLAST of DY271052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATT5_SOLTU2.097e-4149.47Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PT2K4_SOLTU7.969e-4148.95Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ... [more]
PAT07_SOLTU1.041e-4048.66Patatin-07 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU1.041e-4046.84Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PAT03_SOLTU1.359e-4046.84Patatin-03 OS=Solanum tuberosum PE=2 SV=1[more]
PAT13_SOLTU2.319e-4046.84Patatin-13 OS=Solanum tuberosum PE=2 SV=1[more]
PAT0_SOLTU3.955e-4047.89Patatin OS=Solanum tuberosum PE=3 SV=1[more]
PT3K1_SOLTU5.165e-4047.89Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PAT17_SOLCD6.746e-4046.84Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]
PT2K2_SOLTU1.151e-3947.89Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YL02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271052 ID=DY271052; Name=DY271052; organism=Citrus clementina; type=EST; length=1197bp
GAAATAAAATGCCCTTTGCCGGTTCTGCAGAAGGAAAGAAAATAACAGTT
CTGAGCATCGATGGAGGTGGCATTAGGGGCATTATTCCGGGCACTATTTT
AGCCTTTCTTGAATCCAAGCTCCAGGAATTGGATGGACCAAGTGCAAGAA
TTGCAGATTATTTTGATGTAGTAGCAGGAACAAGCACCGGCGGATTGGTA
ACCACCATGCTTACGGCACCCAACAAGGAAGGCGGACCTTTCAGTGCTGC
AAAGGATATCAATAATTTTTATCTTGAGCACGGTCCTAAAATTTTCCCTC
AAATTAGCCGCAGCAACTTCTTGGAATCGATAGCAAGCTCTATCGATAAA
CTGCTGCTTGGACCAAAGTATGATGGGAAGTACCTGCGGACACTAGTAAA
CGAGCTACTAGGAGACGTTACTGTGAAAGAGACTCTTACCAACGTGGTTA
TACCAACTTTTGACATCAAGCTTCTTCAACCAGTCATCTTCTCAACCACC
GATGGAAAAGAGAACGTTTTGAAGAATGCTCGGCTGGCTGATATATGCAT
AAGCACTTCTGCAGCGCCCACTTACTTCCCACCTCACTACTTGGAGACCT
AAAGACAGTGACAGTGGCAGAACCCGAACTTTTGATCTTGTTGACGGTGG
AGTTGCTGCTAATAATCCTACCCTATTGGCAAATAACCCACATATCGAAG
GAAATGGTGAAGCAGAACCCCCATTTCAGGAACAAAAACCCAATGGGCGG
TAAAATTTTGCTGGGACTATCTCTAAGGCCAAGTACCACCCATAAAAAAA
TTGAAATACAATGCCACCCTAAAGCCCCCCAAGTGGGGGCATTTTCCAAT
TGGGATCTATGAAAAATAGTAAAACCCCAAATACTCCGAATCCAACCCGA
AAAGAGAACCTCCAAAAATTGATAGTTTTCCCCTGGTTCCGCCCCTCTTT
TCAATTCCGGCCTGAAGCAAAAGGAAACCTACCCTATTGAATTTTCAAGA
TACATATCCTTTTAACTGGTATAAATCCGCACTTATGTTTTGACATTTTC
CCCCGCATTGTGGAAAAAATACATGAAGACTTTGTTACGTAAACTCTGTA
AAGCCTGTTACTTTTATGAAAAACATACACGCATGCGTGCGAACTGGTAA
TATTCTCGCATTCCTAGAATTGCGTAAGTCTCGACTTTGGAAACGGG
back to top