DY271062

Overview
NameDY271062
Unique NameDY271062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271062 vs. ExPASy Swiss-Prot
Match: LHP1_ARATH (Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana GN=LHP1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.290e-27
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:  394 QEERPKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 582
            QEERPKLDEGF+EIEAIRRKRVRKG++QYLIKWRGWPE ANTWEPLENLQS +DVIDAFE SL
Sbjct:   97 QEERPKLDEGFYEIEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENLQSIADVIDAFEGSL 159
[Close]
BLAST of DY271062 vs. ExPASy Swiss-Prot
Match: LHP1_ORYSJ (Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica GN=LHP1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.436e-22
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:  406 PKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 582
            PKL EG++EIE IRR+R+RKG+LQYL+KWRGWPE+ANTWEPLENL +CSD+IDAFE  L
Sbjct:  100 PKLAEGYYEIEDIRRRRLRKGKLQYLVKWRGWPESANTWEPLENLSACSDIIDAFEMRL 158
[Close]
BLAST of DY271062 vs. ExPASy Swiss-Prot
Match: LHP1_SOLLC (Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.155e-22
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:  376 DEDAVPQEERPKLDEGFFEIEAIRRKRVRKGQLQYLIKWRGWPENANTWEPLENLQSCSDVIDAFEESL 582
            D D V ++ +PKL EGF+EIE +RR+R  KG++ YLIKWRGWPE+ANTWEP  NL SC+D+IDA+EESL
Sbjct:   76 DGDGVAKKVKPKLAEGFYEIETVRRRRTVKGKVYYLIKWRGWPESANTWEPETNLSSCTDIIDAYEESL 144
The following BLAST results are available for this feature:
BLAST of DY271062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LHP1_ARATH4.290e-2788.89Chromo domain-containing protein LHP1 OS=Arabidops... [more]
LHP1_ORYSJ2.436e-2276.27Probable chromo domain-containing protein LHP1 OS=... [more]
LHP1_SOLLC4.155e-2265.22Chromo domain protein LHP1 OS=Solanum lycopersicum... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YL12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271062 ID=DY271062; Name=DY271062; organism=Citrus clementina; type=EST; length=650bp
CTCGGTGTGTGTAACTCACCGAATAATTTTTCGCCAACAGAAACTCGAAA
GTTTTTTATTTATTTTTTTCCATTCGCAAGGAATTAGCAGAAAAAAAATT
AAAAAAAGAAAATGAAAGTGAAGGGCGGAGGGAAGAGGAAGGTGGTGAAT
CCGGCACTAAACGATGCCGAGGAGGCGAATGACGATATTGAAAATCAAGA
AAATATCAATTACGATTCAATTGATTTGATCGACGTCGAGTATCAAGAAA
ATCAAGAGCAAGAAAAAGAAAATGAAAAAGAAAAAGAAAAAGGAAAGGAG
AAAGTCGGAGAGGAGAAAAATAATGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAAGAAGAGGAAGGGGAAGAGGAAGACGAAGATGCGGTGCCTCAAGAAG
AGCGGCCGAAGCTTGATGAAGGATTCTTCGAAATCGAAGCCATTCGTCGG
AAAAGGGTTCGCAAGGGCCAGCTTCAGTATCTTATCAAGTGGCGTGGCTG
GCCAGAAAATGCCAACACCTGGGAGCCATTGGAGAATCTGCAGTCATGTT
CGGATGTTATTGATGCATTTGAGGAGAGCTTGCGGTCGGGTAAATCTTCT
AGGAAGCGCAAACGCAAGGGGGGTGGTTCTAGTAGCCTGCCAAAGAAGAA
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