DY271079

Overview
NameDY271079
Unique NameDY271079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP19_ARATH (Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 2.892e-54
Identity = 117/219 (53.42%), Postives = 142/219 (64.84%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLSLPCDD-FSHLRVSSC-KSKSAGAIDPQAVPAHFKDTNVDNIESSSNGVFSHESHSSS 653
            KRL+ R APNILTIALKRFQ GRFGKLNKR++FPET DL PYMS GG+ +DVYKLYAV+VH+DMLNASFFGHYICYVKDFRG+WYR+DD +V  V+LE+VLSQ AYMLLY+RV  RPS L   ES   +K +   +N E+     + S     +  N  S+S  C+   SH       K  S  A  P +      D  VD ++S SN     E  S +
Sbjct:  368 KRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMSGGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYMLLYSRVQPRPSNLRSEESQDEKKTD--TLNTESNQ---DGSVESSGVGTNDTSVSSLCNGIISHSEDPEYEKESSLSASVPVSEEGKEVDVKVDTVDSESNRSIDMEHDSGT 581          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP18_ARATH (Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana GN=UBP18 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 2.292e-51
Identity = 116/237 (48.95%), Postives = 145/237 (61.18%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSY--------------LVDTESSSSRKEEPSAVNA----------------ETEPKEVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAIDPQAVPAHFKDTNVDNIESSSNG 623
            KRLT RRAPNILTIALKR+Q GR+GKLNKR++FPETLDL+PYMS+GGD +DVYKLYAV+VH+DMLNASFFGHYICY+KDF G+WYR+DD ++ SV+LE+VLSQ AYMLLY+R+ AR S                +DTES      E S V A                E  P      S   S +P+   L+  C      R+ +  S+S  +ID         D+  D+ E  +NG
Sbjct:  362 KRLTIRRAPNILTIALKRYQGGRYGKLNKRISFPETLDLNPYMSEGGDGSDVYKLYAVIVHLDMLNASFFGHYICYIKDFCGNWYRIDDSEIESVELEDVLSQRAYMLLYSRIQARSSSSCLRSEVKDEKKTDTLDTESCVKELVESSMVGAIESRSSTHATIEDPVCEQSPSPSPSPSPSPSPSPSPSVLASECCSEVE-RIDTLDSESNSSID---------DSATDHQEDVANG 588          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP16_ARATH (Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.719e-36
Identity = 76/165 (46.06%), Postives = 110/165 (66.67%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYL---VDTESSSSRKEEPSAVNAETEPKEVECSSTMESINPNSRSLS 488
            K+L     PN+LTIALKRFQ+G+FGKLNK + FPETLDL+PY+S G +++  YKLY V+VH+D++NA+F GHY+CY+++ +  WY+ DD  V + D+E +L++GAYML Y R +  P  L     TE+S+ +   P        PK  E S+   S++ +S  LS
Sbjct:  736 KKLKITEPPNVLTIALKRFQAGKFGKLNKLIRFPETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTVVTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTEASNKKSRVPL-------PKANEKSTISRSVSTSSPELS 892          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP15_ARATH (Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 7.912e-36
Identity = 80/173 (46.24%), Postives = 109/173 (63.01%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARP--------SYLVDTESSSSRKEEPSAVN---AETEPKEVECSSTMESINPNSRSLS 488
            K L+   APNILTI LKRFQ GR+GK+NK ++FPE LD+ P+M+  GD   +Y LYAV+VH+D LNASF GHYI YVKD RG+WYR+DD ++  V + +V+S+GAYML Y R   RP        + +  ++  +  KE+   VN      + K  E SS+  S+  +S   S
Sbjct:  632 KELSIHEAPNILTIVLKRFQEGRYGKINKCISFPEMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMRSYPRPQRGEHNGKAPVHHSQPRNEMKEQRKPVNRFKPRADHKNTESSSSEWSLFTSSDEAS 804          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP17_ARATH (Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.188e-33
Identity = 83/189 (43.92%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDG--GDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAETEPK--EVECSSTMESINPNSRSLSLPCDDFSHLRVSSCKSKSAGAID 557
            K+L     PNILT+ LKRFQS  FGKL+K + FPE LD+SPYMSD   GD   VY LYAVVVH+D ++  F GHY+CY+K   G W+++DD  V  V LE VL +GAYMLLY R S RP        S  R+   +  + +   K  + + +S +  ++ +S SLS      S    SSC +K +  I+
Sbjct:  520 KKLMILEGPNILTVVLKRFQSDNFGKLSKPIHFPELLDISPYMSDPNHGDHP-VYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLETVLLEGAYMLLYARDSPRPVSKNGGRKSKQRRNLAAIPSRKGNKKQRDGDNNSLLPRVDWSSGSLSSMFS--SSDTTSSCSTKDSSGIE 705          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP36_HUMAN (Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 5.505e-21
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV---SARPSYLVDTESSSSRKEEPSAV 410
            KR T  R  N+LT++LKRF +   GK+ K V +PE L++ PYMS       +Y LYAV+VH     +   GHY CYVK   G WY+++D  V S +++ VL+Q AY+L Y R+      P  L+    SSS    PS +
Sbjct:  313 KRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIRPYMSQNNGDPVMYGLYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRIPGSKKSPEGLISRTGSSSLPGRPSVI 449          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP42_HUMAN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.226e-20
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNR 338
            KR T  R+ N+LT++LKRF +   GK+ K V +PE LD+ PYMS       VY LYAV+VH         GHY CY+K   G WY+++D  V++ D+  VLSQ AY+L Y R
Sbjct:  302 KRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIVYVLYAVLVHTGF--NCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIR 411          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: U17L2_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 2 OS=Homo sapiens GN=USP17L2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.568e-20
Identity = 59/139 (42.45%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            K LT   +  +L + LKRF      KL K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD KVT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  265 KTLTLHTSAKVLILVLKRFSDVTGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGW--SCHDGHYFSYVKAQEGQWYKMDDAKVTACSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP36_MOUSE (Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.313e-19
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRV 341
            KR T  R  N+LT++LKRF +   GK+ K V +PE L++ PYMS       +Y LYAV+VH     +   GHY CYVK   G WY+++D  V S +++ VL+Q AY+L Y R+
Sbjct:  313 KRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIRPYMSQSSGDPVMYGLYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLRI 423          
BLAST of DY271079 vs. ExPASy Swiss-Prot
Match: UBP17_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo sapiens GN=USP17A PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.313e-19
Identity = 57/139 (41.01%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    3 KRLTFRRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSDGGDRTDVYKLYAVVVHVDMLNASFFGHYICYVKDFRGHWYRVDDCKVTSVDLEEVLSQGAYMLLYNRVSARPSYLVDTESSSSRKEEPSAVNAE 419
            K LT   +  +L + LKRF      K+ K V +PE LD+ PYMS       VY LYAV+VH     +   GHY  YVK   G WY++DD +VT+  +  VLSQ AY+L Y + S    +      S SR  EP A+ AE
Sbjct:  265 KTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGW--SCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERH----SESVSRGREPRALGAE 397          
The following BLAST results are available for this feature:
BLAST of DY271079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
UBP19_ARATH2.892e-5453.42Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabid... [more]
UBP18_ARATH2.292e-5148.95Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabid... [more]
UBP16_ARATH2.719e-3646.06Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabid... [more]
UBP15_ARATH7.912e-3646.24Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabid... [more]
UBP17_ARATH8.188e-3343.92Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabid... [more]
UBP36_HUMAN5.505e-2141.01Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo s... [more]
UBP42_HUMAN1.226e-2046.43Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s... [more]
U17L2_HUMAN3.568e-2042.45Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
UBP36_MOUSE2.313e-1944.25Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus mu... [more]
UBP17_HUMAN2.313e-1941.01Ubiquitin carboxyl-terminal hydrolase 17 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271079 ID=DY271079; Name=DY271079; organism=Citrus clementina; type=EST; length=1218bp
GGAAGCGGTTAACTTTTCGACGAGCTCCGAACATTCTCACAATTGCCTTA
AAAAGATTTCAGAGCGGAAGATTTGGGAAACTTAACAAAAGAGTTACTTT
TCCTGAGACTTTGGACCTAAGTCCTTACATGAGTGATGGAGGAGATCGTA
CAGATGTCTACAAGCTATATGCTGTTGTTGTCCATGTGGACATGCTTAAT
GCCTCGTTTTTTGGTCACTATATCTGTTACGTCAAGGATTTTCGTGGACA
CTGGTACAGAGTTGATGACTGTAAGGTTACTAGTGTTGATTTGGAAGAGG
TACTTTCTCAGGGAGCATATATGCTTCTATATAACAGGGTTTCAGCACGA
CCTTCATATTTAGTCGATACTGAATCTTCGAGTTCAAGGAAGGAGGAGCC
CAGTGCAGTTAATGCAGAAACAGAGCCAAAAGAAGTTGAATGCTCCTCTA
CCATGGAGTCAATTAATCCCAATAGCAGGTCTCTTTCCCTCCCATGTGAT
GACTTTTCGCATTTGAGGGTTTCAAGTTGCAAAAGCAAGTCAGCTGGGGC
AATTGATCCTCAAGCGGTACCAGCACATTTCAAGGATACTAATGTGGACA
ATATAGAGTCAAGTTCCAACGGTGTTTTCAGTCATGAAAGTCATTCTTCT
TCTTTTTGGCTTTAATTCTGAAGATTTAAGAGTAGATGCCATGGATGTGG
ATACGGGAAATGCTCCGTCAAGTTCGGGGGATCGGCAGGACTTCCTCTAT
TGGCATGTAAAATTGTCTGGAGCCCAAGAAAAGGATTCAAGATGATATGA
ATATTGATGACCCTGAGACATCCCTTATCGGTCCCTAAGGGGGGCCCCTG
GTCCTGGTTAGTGAATCCAAAAGCCGTGGCTAAAAAAACCCAAAAGGTAT
GAATATAAGTTAATCCTGAACCAAGGTCCCCTTGGCGGCAAGGGAAATTA
AAAGTTTGGGGGCGAATTTTGGCCCTTGTCCCAAGGGAAAAATCCTTCGG
CCCCACCGGGTAAAATGTGGAAACATGGAAACCCCTTTTTTAACGGAGTG
GGGGGAAGGAAGAGAAAAGGGGTTTCCCAAAGAAAAGGGGAAAAAAAAAA
AAAGAAAAAATTCCCCACAAAAAACGGGGGGGGGGGGGGGGGGCGTTTTT
TTCCCCCCCAATTTTTTTTTTTTTTTTAATAAATTTTTTTTTTAAGGACC
CCCCCCACCCCTCTTAAA
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