DY271088

Overview
NameDY271088
Unique NameDY271088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1102
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: AB2E_ARATH (ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 1.114e-118
Identity = 208/253 (82.21%), Postives = 230/253 (90.91%), Query Frame = 1
Query:  154 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPK 912
            M+DRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVT  +K+AFISEELCIGCGICVKKCPFEAIQIINLP+DL+KDTTHRYG NTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRF +PPDWQEILT+FRGSELQNYFTRILEDNLKAIIKPQYVDHIP+AV+GNVG+VLDQKDERD KA+LCADL+LNQVI+R+V  LSG    +   +AV+  +  +I  F+EP  YL+VK +
Sbjct:    1 MADRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEAIQIINLPRDLEKDTTHRYGANTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFTSPPDWQEILTHFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAVKGNVGEVLDQKDERDKKAELCADLELNQVIDRDVENLSGGELQR-FAIAVVAIQNAEIYMFDEPSSYLDVKQR 252          
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: AB1E_ARATH (ABC transporter E family member 1 OS=Arabidopsis thaliana GN=ABCE1 PE=2 SV=1)

HSP 1 Score: 379.407 bits (973), Expect = 2.040e-104
Identity = 181/253 (71.54%), Postives = 213/253 (84.19%), Query Frame = 1
Query:  154 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPK 912
            MSDRLTRIAIVS DRCKPKKCRQECKKSCPVVKTGKLCIEV   +K AFISEELCIGCGICVKKCPFEAIQIINLPKDL KDTTHRYG N FKLHRLP+PRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFN PPDW+EILT+FRGSELQ+YF R++E+NLK  IKPQ+VD+I + V+GN+G++L++ DER +  ++CAD++LNQV+ R   ++SG    +   +A +  K   I  F+EP  YL+V+ +
Sbjct:    1 MSDRLTRIAIVSEDRCKPKKCRQECKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGICVKKCPFEAIQIINLPKDLAKDTTHRYGANGFKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNTPPDWEEILTHFRGSELQSYFIRVVEENLKTAIKPQHVDYIKEVVRGNLGKMLEKLDERGLMEEICADMELNQVLEREARQVSGGELQR-FAIAAVFVKKADIYMFDEPSSYLDVRQR 252          
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: ABCE1_MOUSE (ATP-binding cassette sub-family E member 1 OS=Mus musculus GN=Abce1 PE=2 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 1.048e-100
Identity = 175/253 (69.17%), Postives = 209/253 (82.61%), Query Frame = 1
Query:  154 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPK 912
            M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGIC+KKCPF A+ I+NLP +L+K+TTHRY  N FKLHRLP+PRPG+VLGLVGTNGIGKSTALKILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA +G VG +LD+KDE   +A +C  LDL  +  RNV +LSG    +    AV+  +   I  F+EP  YL+VK +
Sbjct:    1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQR-FACAVVCIQKADIFMFDEPSSYLDVKQR 252          
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: ABCE1_HUMAN (ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 1.048e-100
Identity = 175/253 (69.17%), Postives = 209/253 (82.61%), Query Frame = 1
Query:  154 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPK 912
            M+D+LTRIAIV+ D+CKPKKCRQECKKSCPVV+ GKLCIEVTP +KIA+ISE LCIGCGIC+KKCPF A+ I+NLP +L+K+TTHRY  N FKLHRLP+PRPG+VLGLVGTNGIGKSTALKILAGK KPNLG++++PPDWQEILTYFRGSELQNYFT+ILED+LKAIIKPQYVD IPKA +G VG +LD+KDE   +A +C  LDL  +  RNV +LSG    +    AV+  +   I  F+EP  YL+VK +
Sbjct:    1 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQR-FACAVVCIQKADIFMFDEPSSYLDVKQR 252          
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: RLI1_YEAST (Translation initiation factor RLI1 OS=Saccharomyces cerevisiae GN=RLI1 PE=1 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 6.807e-92
Identity = 168/259 (64.86%), Postives = 207/259 (79.92%), Query Frame = 1
Query:  154 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG---NVGQVLD---QKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPK 912
            MSD+ +RIAIVS+D+CKPKKCRQECK+SCPVVKTGKLCIEVTP +KIAFISE LCIGCGICVKKCPF+AIQIINLP +L+   THRY  N+FKLHRLP PRPGQVLGLVGTNGIGKSTALKILAGK KPNLGRF++PP+WQEI+ YFRGSELQNYFT++LED++KAIIKPQYVD+IP+A++G    VG++L    +K   D+K  +   L L  V+ R++ +LSG    +   + +   +   +  F+EP  YL+VK +
Sbjct:    1 MSDKNSRIAIVSADKCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYI-KILQLENVLKRDIEKLSGGELQR-FAIGMSCVQEADVYMFDEPSSYLDVKQR 257          
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: YOX6_SCHPO (Uncharacterized ABC transporter ATP-binding protein C14F5.06 OS=Schizosaccharomyces pombe GN=SPBC14F5.06 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.981e-91
Identity = 157/260 (60.38%), Postives = 201/260 (77.31%), Query Frame = 1
Query:  154 MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQ---GNVGQVLDQKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPKAETG 924
            MS+ LTRIAIVS D+C+PKKCRQEC++SCPVV+TGKLCIEV P  +IAFISE LCIGCGICVKKCPF AI IINLP +L+ + THRY  N+FKLHRLP PRPGQVLGLVGTNGIGKSTALKIL+GK+KPNLGR++NPPDW E++ YFRGSELQN+FT+++EDN+KA+IKPQYVDHIP+A++     V  ++  +   +   ++    DL  ++NR VG LSG    +   +A +  +   +  F+EP  YL++K + + G
Sbjct:    1 MSESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCPFGAINIINLPTNLESEVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILSGKMKPNLGRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQYVDHIPRAIKTGDKTVSGLIKARANNNNFEEVMDHTDLQNLLNREVGHLSGGELQR-FAIAAVATQKADVYMFDEPSSYLDIKQRLKAG 259          
BLAST of DY271088 vs. ExPASy Swiss-Prot
Match: Y719_METJA (Uncharacterized ABC transporter ATP-binding protein MJ0719 OS=Methanocaldococcus jannaschii GN=MJ0719 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.770e-58
Identity = 112/248 (45.16%), Postives = 164/248 (66.13%), Query Frame = 1
Query:  172 RIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPAAKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDT-THRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKILAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKADLCADLDLNQVINRNVGELSGWRTSKNLPLAVLLDKMPKIIWFEEPPIYLEVKPK 912
            R+AI+  DRC+PKKC  EC K CP V+ G+  IE+        ISE LC GCGICVK+CPF+AI II LP++L +D   H YG N FKL  L +PR G V+G++G NGIGKST L+ILAG+L PNLG+ +  P++ +++ YFRG+ELQ YF ++    +KAI K QYVD +PK V+G VG +L + DE+    ++   L+L  +++R + +LSG    + + +A    +   I +F+EP  +L+++ +
Sbjct:   14 RLAIIDYDRCQPKKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGICVKRCPFKAISIIGLPEELSEDKIVHSYGQNRFKLFGLVIPRDG-VVGIIGQNGIGKSTVLRILAGELIPNLGKHDKEPNYDDVIKYFRGTELQEYFEKLKNKGVKAIHKVQYVDILPKVVKGKVGDLLKKVDEKGKFDEVVEKLELKNILDRELSQLSGGELQR-VAIAAAYLRNGDIYFFDEPSSWLDIRQR 259          
The following BLAST results are available for this feature:
BLAST of DY271088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AB2E_ARATH1.114e-11882.21ABC transporter E family member 2 OS=Arabidopsis t... [more]
AB1E_ARATH2.040e-10471.54ABC transporter E family member 1 OS=Arabidopsis t... [more]
ABCE1_MOUSE1.048e-10069.17ATP-binding cassette sub-family E member 1 OS=Mus ... [more]
ABCE1_HUMAN1.048e-10069.17ATP-binding cassette sub-family E member 1 OS=Homo... [more]
RLI1_YEAST6.807e-9264.86Translation initiation factor RLI1 OS=Saccharomyce... [more]
YOX6_SCHPO1.981e-9160.38Uncharacterized ABC transporter ATP-binding protei... [more]
Y719_METJA3.770e-5845.16Uncharacterized ABC transporter ATP-binding protei... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YM20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271088 ID=DY271088; Name=DY271088; organism=Citrus clementina; type=EST; length=1102bp
AGAAATTAAAAACTCTAATGAAAAGAAAAAGAAACCCTAACACTTAACTA
AAGAGAAATTCTGTGTTGCTATTGCTCTGCGTGTGCCCAACGCTTTCACA
ATCCACAGAGAGCGTTCTCAGCACACGTCTCTTGTCCGTTTCAAAGAGAG
AAGATGTCGGACCGATTGACGCGTATAGCTATTGTTAGTTCTGATAGATG
CAAGCCCAAGAAGTGTCGTCAGGAGTGTAAGAAGAGTTGTCCCGTTGTCA
AAACCGGGAAGTTGTGTATTGAGGTTACTCCTGCAGCTAAGATTGCCTTT
ATCTCTGAGGAGTTGTGCATTGGATGTGGTATCTGTGTTAAGAAATGTCC
ATTTGAAGCAATTCAGATCATCAACTTGCCAAAGGATTTGGATAAGGATA
CAACTCATCGATATGGCCCCAATACTTTCAAATTACATAGGTTGCCTGTA
CCGAGGCCTGGGCAAGTTCTTGGCTTAGTTGGAACAAATGGTATTGGGAA
ATCAACTGCACTTAAGATTTTGGCTGGGAAGCTGAAACCAAATTTGGGTC
GTTTCAATAACCCTCCTGATTGGCAGGAAATTTTGACCTACTTTCGTGGA
TCTGAGCTGCAAAATTATTTTACTCGTATTCTGGAAGATAATTTGAAGGC
TATTATAAAGCCTCAGTATGTTGATCACATTCCAAAAGCAGTTCAAGGCA
ATGTGGGGCAGGTGCTTGACCAAAAAGACGAAAGAGATATGAAGGCGGAT
CTTTGCGCGGATCTTGACCTGAATCAAGTCATAAACCGTAATGTTGGGGA
ATTATCCGGGTGGAGAACTTCAAAAAATTTGCCTTTGGCTGTTTTGCTGG
ACAAAATGCCAAAAATAATATGGTTTGAAGAACCGCCAATTTATCTTGAA
GTTAAACCGAAGGCTGAAACCGGCCCAAGTTTTCCAATACCTTTCCTCCA
GCCCAAAAAACTTTTTTAATTTGTTGTGAGAACTTAAATCTTTACGTTCC
TTTTATTTCCCCGTCCAAATTTTCTTTTTCCGGTTTTATATAGGAAAACC
CGGGGGGCGTTTTGGGGGCTTGTTTTTTCCTCCTTCTTTTTCCTCGTTTC
TC
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