DY271092

Overview
NameDY271092
Unique NameDY271092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1128
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271092 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.589e-11
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 3 
Query:    6 YSLFSLSNFISENNHQMSSDGIFGNNMVPKLRRVSTEL-NIGSSQSDNLSPDSHSSVHSFGTELGGNQGCNSTKVGVRSIQLFGKIIHMKQPVESGFGDVVCPHDDGSKGFSERE 347
            +  F+ + FI  N  Q+ ++     + +P L +VSTE+ N GS  SDNLSP+S+++  S G +L GN+G  S K  V SIQLFGKII +++  ESG  +     +DGSK  S+ E
Sbjct:  449 FGSFNPTGFIGGNPPQLFTNNFL--SPLPDLGKVSTEMMNFGSPPSDNLSPNSNTTNLSSGNDLVGNRGPLSKK--VNSIQLFGKIITVEEHSESGPAESGLCEEDGSKESSDNE 559
The following BLAST results are available for this feature:
BLAST of DY271092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFQ_ARATH1.589e-1141.74Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YN01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271092 ID=DY271092; Name=DY271092; organism=Citrus clementina; type=EST; length=1128bp
ATCCTTATAGCCTTTTTAGTTTATCAAACTTCATAAGCGAGAATAATCAT
CAGATGTCCTCTGATGGTATCTTTGGCAACAACATGGTGCCAAAGTTGAG
ACGTGTGTCCACTGAGCTGAACATTGGCAGTTCACAGTCTGACAACTTAT
CACCCGATAGCCACAGTAGTGTGCATTCCTTTGGCACTGAACTTGGTGGG
AACCAGGGCTGTAACTCGACAAAAGTTGGTGTTAGGTCAATTCAGTTGTT
TGGTAAGATCATACATATGAAGCAGCCTGTTGAAAGTGGTTTTGGTGATG
TTGTTTGCCCGCATGATGATGGTAGTAAAGGGTTCAGTGAAAGGGAAGAT
GTGAATTTGCCATTGGATTTGTCCTTGACTTACACAGAACTGCTCAACAG
GTTTGGTATCCAAGGTCGTGGCTCAGAAGTTGAAGATGAAGTAGTTGCTG
AAGCTTGCTCTTTATGAAAAAATAATTGTGCAATGAAATGCAGATATGTT
CCTGTGCAGGTACTCTGGCAGGTGGGAGCAGGAAGATGACTTGGTGGGCT
TTGTCCAGTACTACTTTGTGTATGCTCATATTGTTACGTGGGAATGGATC
AAAACCTGGGATCTATCATACAACTTCAATAACACCAACTTTAAATCACG
TACTTATGGACGGTCTTGAAATTTCTGATTGCGTTCTGAACAATCCACAT
GCCTTTGCTCTCTATACGCCAACCCTCAAAACACTTCTTTCCCCATAATA
CCTGTATCGACACGTCCAACTCCCATTCGTTTACTCATCAAACATAAATG
ACAAGTTAGTAGTGAAACAAGTGAAAAATCAAATCCCAAACAACAAATCA
GACTTGCCCCTCTCCTCTCACTTATGCTCCCAATTCATTTTGCTAAGTCA
ACGCCCCATCACGCACGAGAACCCTTCTAGGCCGAATCTCCCAAGGCCCC
CAATGCCGGGAGAACATCGATCATCTATAATAATGACCACTTACACTAAG
CTACACGAATACAACTAGAGAAATATGGATCAAACAATACCACTTATTAC
TGATACTTATATTAATTAACTCTGTATAATTAGTACTATAATATTTACCT
ACCTGTCAAATCTATTCAACACAACTAA
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