DY271093

Overview
NameDY271093
Unique NameDY271093
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1103
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271093 vs. ExPASy Swiss-Prot
Match: UTP7_SCHPO (Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe GN=utp7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.658e-13
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:  424 KELDTNMKKYLRGEGANLEILKDKKLKGQLALREELYGKSAKAAAKVEKWLMPSEGGYLEAEGVEKTWRIKQDAIAREVDILSSRNQYDIVLPELGPYTLDFTSSGQYMAAAGRKGHLAVVELKNMNL 807
            ++++ + KKY RG   N + +KDKKL+  +   EE       + AK E  L     G LEAEG+E+T++ +QD +A  V + ++   + + L + G Y+ D+T  G+ +   GRKGH++  + +   L
Sbjct:    9 EDVNASTKKYSRGRKLNPKKIKDKKLRSNIQKIEERIENVESSLAKTEI-LHEDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSFSLDLDKFGGYSFDYTRDGRMILLGGRKGHISAFDWRTGKL 135
[Close]
BLAST of DY271093 vs. ExPASy Swiss-Prot
Match: UTP7_YEAST (U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae GN=UTP7 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.828e-13
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  487 KDKKLKGQLALREELYGKSAKAAAKVEKWLMPSEGGYLEAEG-VEKTWRIKQDAIAREVDILSSRNQYDIVLPELGPYTLDFTSSGQYMAAAGRKGHLAVVELKNMNL 807
            KDKKL+  L   +E Y K+  +AA  + +L+P   GYLE E  +EKT++++Q  I   VD+ ++    D+ L E GPY + +  +G ++   GRKGH+A ++ +   L
Sbjct:   38 KDKKLRAGLKKIDEQYKKAVSSAAATD-YLLPESNGYLEPENELEKTFKVQQSEIKSSVDVSTANKALDLSLKEFGPYHIKYAKNGTHLLITGRKGHVASMDWRKGQL 144
The following BLAST results are available for this feature:
BLAST of DY271093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UTP7_SCHPO1.658e-1332.03Probable U3 small nucleolar RNA-associated protein... [more]
UTP7_YEAST2.828e-1336.11U3 small nucleolar RNA-associated protein 7 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271093 ID=DY271093; Name=DY271093; organism=Citrus clementina; type=EST; length=1103bp
CCTCTCTCTCCTTCTAAACTTGAAGTCTATAACCCTTTCAAGTTTCAGCT
CGGTTAAAAAACGGAGAAAAAAAAAAATAAAACTAAAACCCTAGAGCTCG
GCACTCATCTCCTTCTTCTTCTCTCTGAAATTTGGAACTTCTCGTCGCCG
CCGCCGTTTGAAGCTCGCCGCGGCTGGAAGCTAGGCCCCATCACCGTGTT
ACTGTTGCTGCACTAAGTTCTTCGCCGCACGTTGCTCACCTAGTCTCCGC
TGCACGGCTGCACTGCATCTCCGTTAACTCTCTAAACGGTGCTTGTTGAT
TGCTGATTGGTGTCGGTTTTGCTGGCCTGGGCATCTGTTGAAGATTGCAC
GTCCGGGATGGGTGCGAAAGAAGAGAACGGAGATGGTGGAGGTATTCGGC
CTCCTATTGAACAGGAGATCTCCAAGGAATTAGATACAAACATGAAGAAA
TATCTCAGAGGAGAGGGTGCTAATTTGGAGATTTTAAAAGACAAAAAATT
GAAGGGGCAACTTGCTCTCAGAGAAGAATTATATGGAAAGTCTGCGAAAG
CTGCTGCCAAAGTTGAGAAGTGGCTTATGCCAAGTGAGGGAGGCTATTTG
GAGGCAGAAGGTGTAGAAAAGACATGGCGGATCAAACAAGATGCAATTGC
TCGGGAAGTAGATATCCTAAGCTCCAGAAATCAATATGATATCGTGTTAC
CGGAACTTGGTCCATATACTCTGGATTTTACGTCAAGTGGTCAATATATG
GCAGCTGCTGGACGCAAGGGGCACCTAGCTGTTGTGGAACTGAAAAATAT
GAACTTAAATTAAAAAATTTCAAGTTAAAGAAACAGTACGCGAAGTGGGT
CTTCTTGCACAAAGGAGCTGGTTTTTGGCTGCTGGCCAAAAAAAATACCC
CTTAAATTTACAATCCAAAATGGCACGAAACTTCTTTGTTTAAGGGAAAA
GGGGGGCATTTCTAAAAACTTCATTTTCCAGAAAAACCCCTTTTTCTTTG
GGGTTCCAAAAAAAAAATTTTTGGGCACCCTTCCAAATTCAAAAAGTTTT
AAAAGGGGGGGAAAAATGGGGGGGGTAATTTTTCCAAAAAGGGGTCCCGG
GGC
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