DY271110

Overview
NameDY271110
Unique NameDY271110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1127
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.619e-14
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  175 LQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKDKFLLQGVVASPGATAK-----DITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGN 555
            + + N     V FKVKTT PK YCVRPN+G + P+ST +V V +Q+ KE P PD +C+DKFL+Q +      T+      +   EM  ++ G  + + K+R +Y +  +PP    +  E  S+    VS  G+
Sbjct:   23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEM--EKQGRSIFDRKIRCVY-STKQPPQSADKQVENTSTSNPPVSVEGS 152          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: YDFC_SCHPO (Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe GN=SPAC17C9.12 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 3.782e-13
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  139 FPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPP 480
            FP  L + + C L+L N     + FKVKTT PK+YCVRPN G +   S   V V +Q     P P  +C+DKFL+Q     P     DI  +++ + +  ++ E K+R +Y   P
Sbjct:   11 FPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIA-DIWTQVSKANISERKIRCVYSEGP 124          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPB_RAT (Vesicle-associated membrane protein-associated protein B OS=Rattus norvegicus GN=Vapb PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.877e-12
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   91 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSP 495
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+GV+   ++ +V V +Q   +  P+ + K KF++Q + A P  +  +    ++ +     + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPPDTSDME---AVWKEAKPEDLMDSKLRCVFELPAENAKP 132          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPB_MOUSE (Vesicle-associated membrane protein-associated protein B OS=Mus musculus GN=Vapb PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   91 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSP 495
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+GV+   ++ +V V +Q   +  P+ + K KF++Q + A P  +  +    ++ +     + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPPDTSDME---AVWKEAKPEDLMDSKLRCVFELPAENAKP 132          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPA_PONAB (Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  124 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 549
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P ST  V V +Q   +  P+ + K KF++Q + A P  +  +    ++ +     + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTSDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLN 168          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPA_HUMAN (Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  124 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 549
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P ST  V V +Q   +  P+ + K KF++Q + A P  +  +    ++ +     + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTSDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLN 168          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VP33_APLCA (Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.315e-12
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   91 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQG------VVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 477
            M S  + L +EP  EL+F       ++  L+LSN TD  + FKVKTT PK+YCVRPN+G++ P+++  V V +Q     P +   K KF++Q       VV S     KD  PE         + + KLR ++  P
Sbjct:    1 MASHEQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVMLQPFNYDPNEKN-KHKFMVQSMYAPDHVVESQELLWKDAPPE--------SLMDTKLRCVFEMP 127          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPA_RAT (Vesicle-associated membrane protein-associated protein A OS=Rattus norvegicus GN=Vapa PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 9.315e-12
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  124 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 549
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+GV+ P S   V V +Q   +  P+ + K KF++Q + A P  +  +    ++ +     + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPLPKPHSVSLN 168          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPA_MOUSE (Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.217e-11
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  124 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 549
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P S   V V +Q   +  P+ + K KF++Q + A P  +  +    ++ +     + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPLPKPHSVSLN 168          
BLAST of DY271110 vs. ExPASy Swiss-Prot
Match: VAPB_PIG (Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.075e-11
Identity = 48/137 (35.04%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   91 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA-GHHVEECKLRVLYVAPPRPPSP 495
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+G++   ++ +V V +Q   +  P+ + K KF++Q + A   A   D+  E   KEA    + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSMFAP--ADTSDM--EAAWKEAKPEDLMDSKLRCVFELPAENDKP 132          
The following BLAST results are available for this feature:
BLAST of DY271110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YH75_SCHPO2.619e-1436.09Vesicle-associated membrane protein-associated pro... [more]
YDFC_SCHPO3.782e-1336.52Uncharacterized protein C17C9.12 OS=Schizosaccharo... [more]
VAPB_RAT1.877e-1232.35Vesicle-associated membrane protein-associated pro... [more]
VAPB_MOUSE2.451e-1232.35Vesicle-associated membrane protein-associated pro... [more]
VAPA_PONAB2.451e-1230.72Vesicle-associated membrane protein-associated pro... [more]
VAPA_HUMAN2.451e-1230.72Vesicle-associated membrane protein-associated pro... [more]
VP33_APLCA9.315e-1236.03Vesicle-associated membrane protein/synaptobrevin-... [more]
VAPA_RAT9.315e-1230.72Vesicle-associated membrane protein-associated pro... [more]
VAPA_MOUSE1.217e-1130.07Vesicle-associated membrane protein-associated pro... [more]
VAPB_PIG2.075e-1135.04Vesicle-associated membrane protein-associated pro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YO02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271110 ID=DY271110; Name=DY271110; organism=Citrus clementina; type=EST; length=1127bp
TTTCCTTTCCCCTTTCACCGGAACTACTTTCCCTTGCCGGAAACTGCCAG
TTACTTTCTATCTCCAGCCCCAACCTAAATCGTTTGCGTCATGATGAGTA
CTGGCGAGCTTCTCAACATCGAACCTCAGGAGCTTCAATTTCCTTTTGAA
TTGAGGAAGCAGATCTCGTGCTCTCTACAGTTATCAAATAAGACAGATAA
TTATGTGGCTTTCAAGGTTAAAACGACAAATCCAAAGAAGTATTGTGTTA
GGCCCAACACTGGCGTGGTCTTGCCGAGGTCTACATGTGATGTTATAGTT
ACAATGCAATCGCAAAAGGAGGCCCCACCAGACATGCAATGCAAAGACAA
GTTCTTACTTCAGGGTGTGGTTGCCAGTCCTGGAGCCACAGCTAAAGATA
TTACTCCAGAGATGTTCAATAAGGAGGCGGGTCATCATGTTGAAGAGTGC
AAACTGAGGGTTCTTTATGTGGCTCCACCTCGGCCTCCATCTCCAGTTCA
CGAAGGATCAGAAGAAGGTTCTTCACCGAGGGCATCAGTTTCGGATAATG
GGAATTTCAGTGCTTCCGAATTTTCAGCCGCTGCTTCAAGAGCTTTTTGT
TGAGCAATATGAGCCGCAAGATAAGTCAACAGAGGCAAGGGCTCTCATTT
CAAAGCTAACTGAGGAGAAAAACTCTGTTATTCAGAAAAATAACAAACTT
CAACAGGGACTGGAGCTCTTAAGGCGTCAAGCCAACAAAAGTAACAGTGG
ACTCCCCCTTCATATATGTTGGTTATTGTTGGCTCCATTGGTAACATTTT
TGGGGGTACTTAATAAAAAAAATTTGACCAACCAAGACATTTTTTGATTT
CCTTCAATACCCTAGCCCAAAAAATGAAATTGTAAAAAAATTTGAAAAAA
CAAAAATTGTGAACTGAACCCACCACCCTCTTTCATTGGGGTCTTTGGGT
CGTGACAAAAAACCTATTTTAAATTTCAAGGGGAGATTTTTAGAGGGCCC
CAGCCCTGTAAAAATATAAGTAAACGGGGTCAAAAATATTCTTCGTTTTT
CCCTTCATACGAAAAGCTTTTAGGGATTTTTTATCTTTTGTGAGGTCGGA
GGCAAAATGATTCAATCACGCAAATAC
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