DY271113

Overview
NameDY271113
Unique NameDY271113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY271113 vs. ExPASy Swiss-Prot
Match: PAP4_ARATH (Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 3.700e-67
Identity = 126/186 (67.74%), Postives = 155/186 (83.33%), Query Frame = 3 
Query:  192 RASVSFFPAFLNKGKDA---KVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNLESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPNTARGELETTYLDEDLRISRSDKGNLFILKMVDPS 740
            +A  SF PAFL +   A   K LK+ELLEAI PL+RGA A+P+DQ R++Q+ARK+E VNPTKEPLKSDL+NGKWELIYTTS SILQ ++PRFLRS+ NYQ+INVDTL+ QN+E+ PF+N VT D+ PLNS+KVAV+   FKI G IP+KAP++ARGELE TY+DE+LR+SR DKGNLFILKM DP+
Sbjct:   52 QAIFSFPPAFLTRNGRAEKQKQLKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTTSASILQAKKPRFLRSITNYQSINVDTLKVQNMETWPFYNSVTGDIKPLNSKKVAVKLQVFKILGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILKMFDPT 237
[Close]
BLAST of DY271113 vs. ExPASy Swiss-Prot
Match: PAP5_ARATH (Probable plastid-lipid-associated protein 5, chloroplastic OS=Arabidopsis thaliana GN=PAP5 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 6.326e-59
Identity = 116/182 (63.74%), Postives = 142/182 (78.02%), Query Frame = 3 
Query:  198 SVSFFPAFLNKGKDAKVLKEELLEAIAPLDRGAEATPEDQQRVEQIARKLEGVNPTKEPLKSDLLNGKWELIYTTSQSILQTQRPRFLRSVRNYQAINVDTLRAQNLESGPFFNQVTADLTPLNSRKVAVQFDYFKIGGLIPVKAPN-TARGELETTYLDEDLRISRSDKGNLFILKMVDPS 740
            +V  FP      +  K LK EL+EAI PL+RGA A+P+DQ  ++Q+ARK+E VNPTKEPLKSDL+NGKWELIYTTS +ILQ ++PRFLRS+ NYQ IN+DTL+ Q +E+ PF+N VT DLTPLNS+ VAV+   FKI G IPVKAP+ TARGELE TY+DE+LRISR     LFILKM DP+
Sbjct:   48 AVFSFPPRNGGAEKRKQLKHELVEAIEPLERGATASPDDQLLIDQLARKVEAVNPTKEPLKSDLINGKWELIYTTSAAILQAKKPRFLRSLTNYQCINMDTLKVQRMETWPFYNSVTGDLTPLNSKTVAVKLQVFKILGFIPVKAPDGTARGELEITYVDEELRISRGKGNLLFILKMFDPT 229
The following BLAST results are available for this feature:
BLAST of DY271113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAP4_ARATH3.700e-6767.74Probable plastid-lipid-associated protein 4, chlor... [more]
PAP5_ARATH6.326e-5963.74Probable plastid-lipid-associated protein 5, chlor... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YO05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271113 ID=DY271113; Name=DY271113; organism=Citrus clementina; type=EST; length=1175bp
CTTCATCATCATCCTTTCTTTGTCTACACTCTGCTACTGTCGTCACTGGC
TCTCAATTTTCAACCCCACAATTACTCTTCCCTTCTAGGTTTTCTTTCTC
TTACTTCCCCACTAAGCTTAACAACAATTACCAAAACAACCGCAACCTCT
CAAGCACTGAATATTATCATTCTTCGGCTTCTCAAAAATGGAGAGCCAGT
GTTTCTTTCTTTCCTGCGTTCTTGAACAAAGGGAAAGACGCTAAGGTTCT
CAAAGAAGAGCTCCTCGAGGCCATTGCCCCTCTTGATCGTGGCGCCGAGG
CCACTCCTGAAGACCAGCAGAGAGTCGAACAGATAGCACGGAAACTTGAA
GGAGTGAATCCAACAAAGGAGCCACTCAAGTCTGACTTGCTAAATGGAAA
GTGGGAGCTTATATACACAACTTCACAATCAATTTTGCAGACCCAGAGGC
CCAGATTTTTAAGATCGGTTAGAAACTACCAAGCAATCAATGTGGACACA
CTGAGGGCACAAAATTTGGAATCTGGGCCTTTCTTCAACCAGGTTACAGC
AGATTTGACACCTCTGAATTCAAGGAAGGTGGCTGTACAATTTGACTATT
TCAAAATTGGAGGTCTGATACCTGTTAAAGCTCCCAATACGGCTCGTGGT
GAATTGGAAACTACATATTTGGATGAAGATTTGCGGATCTCAAGAAGTGA
TAAAGGCAACTTATTCATCTTGAAAATGGTTGATCCATCTTTACACAGTG
CCCAACTGAAGTATCAATTTAAAAAACTGTATTTTATGAAATGGCAATTA
AACTTTCTTGACTATAAGAAAGCTTCCAAAAGTCCCGTTGAAAAAAATTT
GAAATTTCCTAAAAAACTTTCTTGAATTAAAAGTTTCCTTGAATGGCCCT
ACATTTCAAAAAGGCCCCCCGAAACAAAAAGAATAAAAAAACCTTCCTTT
CAACATTTAAATTTCAAGAAAAAATAAAAGGTTAAAATTTTTGTTGTGTT
TAAAAAAAAAAAAAAAAAAAAAACACCCCAATTTTCCTTTAAAAAAATTT
GGAATTAATAAAAAAAAAATTTTGCTTTTAAAATTTTGGTTTTCCAAAAA
AAGAGGGCTTATATAAACATTCTAAAAAAAAAAAACTTATTTTTTTTTGG
CCCCCCCCCCCCGTCATACATTTCC
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