DY271124

Overview
NameDY271124
Unique NameDY271124
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1190
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271124 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 5.605e-79
Identity = 169/335 (50.45%), Postives = 209/335 (62.39%), Query Frame = 2
Query:    2 MTIVLLLVSATQLAGILVTVTVAANAFSFSRYRKKNLLPLRSPIDESADILASF------NVDAEGEDEFFFGLATAPAHVEDRLNDAWLQFA-EDEPRKKSYKEVLEPADALMGAAAGDVGSQQAPLPSNEVNXXXXXXXXXX-LSIEAMIRGFQKYIEVDEGEEVSGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFLPSLPAWAGEYGGWDLEKTLTISWILPGLLSNGEPNILKLWG*I*WTPWSFVCLPLTVGGNWARGGNP 982
            M +   + +A +LA ++     AANA S++RYR+++L  + SPIDESAD LA F      + D   ED FFFGLATAPAHVEDRL DAWLQFA E             P DALM +AAGD GSQQ+   +   N           +++EAM+RGF+  I  + GE   G+N          H V AWHNVP P+ERLRFWSDPD ELKLAK+TG+SVFR+G+DW+R+MP EP   LK +VNFAALERY+WII RVR YGMKVMLTLF  SLP WAG+YGGW +EKT+T       L+ +   N++  W  I   P  FV L    G  W  GG+P
Sbjct:    1 MPLPAFVAAAARLAVLVAAAATAANAASYARYRRRHLRRIPSPIDESADPLADFRAFPSSDADDSEEDNFFFGLATAPAHVEDRLEDAWLQFATETSCDDNGNVRDQRPVDALMASAAGDGGSQQSWRSTGGENIGDREQRKPLRVAMEAMLRGFE--ILAESGESAGGDN--------CSHNVAAWHNVPCPQERLRFWSDPDAELKLAKETGISVFRMGVDWARLMPEEPTEELKSSVNFAALERYRWIIQRVREYGMKVMLTLFHHSLPPWAGKYGGWKMEKTVTYFMDFVRLVVDRVSNLVDYWV-IFNEPHVFVMLTYCAGA-WP-GGDP 322          
BLAST of DY271124 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 9.494e-69
Identity = 135/279 (48.39%), Postives = 178/279 (63.80%), Query Frame = 2
Query:    2 MTIVLLLVSATQLAGILVTVTVAANAFSFSRYRKKNLLPLRSPIDESADILASFNVDAEGEDEFFFGLATAPAHVEDRLNDAWLQFAEDEPRKKSYKEVLEPADALMGAAAGDVGSQQAPLPSNEVNXXXXXXXXXXLSIEAMIRGFQKYIEVDEGEEVSGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKVMLTLFLPSLPAWAGEYGGWDLEKTL 838
            M +  LL+   ++AG+L TVTV AN  S+SR+R++NL   RSPIDES ++LA FN     E +FFFGLATAPAH ED L+DAWLQFA++ P      E            A D  +++  +                L++ A+ +G  K       E+ +  ++ P++N      V AWHN PH E+RL+FWSDPD E+KLAKDTGV+VFR+G+DWSRIMP EP  G+KE VN+ A+E YKWI+ +VRS GMKVMLTLF  SLP WA +YGGW +EKT+
Sbjct:    1 MELFALLI---KVAGLLATVTVGANVVSYSRFRRQNLAKFRSPIDESKEVLADFNSIEHEEGKFFFGLATAPAHAEDDLDDAWLQFAKETPCSAEEAE------------AADKKARRKKVK---------------LAVGAITKGLAK--NTHGKEDKNAADKPPSKN------VAAWHNAPHAEDRLKFWSDPDKEVKLAKDTGVTVFRMGVDWSRIMPVEPTKGIKEAVNYEAVEHYKWILKKVRSNGMKVMLTLFHHSLPPWAADYGGWKMEKTV 241          

HSP 2 Score: 28.1054 bits (61), Expect = 9.494e-69
Identity = 16/42 (38.10%), Postives = 23/42 (54.76%), Query Frame = 1
Query:  829 KNIDNFMDFTRLVVQR*TKYPKI-MGVNLMDPLVFCMPPFNC 951
            K +D FMDFTR+VV   + Y  +   V   +P +F M  + C
Sbjct:  239 KTVDYFMDFTRIVVD--SMYDLVDSWVTFNEPHIFTMLTYMC 278          
The following BLAST results are available for this feature:
BLAST of DY271124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SFR2_ORYSJ5.605e-7950.45Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
SFR2_ARATH9.494e-6948.39Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YO18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271124 ID=DY271124; Name=DY271124; organism=Citrus clementina; type=EST; length=1190bp
GATGACAATAGTATTACTGCTTGTATCGGCGACGCAGCTCGCCGGAATCT
TAGTGACGGTGACTGTGGCGGCGAACGCCTTCTCTTTTTCGCGTTATCGG
AAAAAGAACCTCCTGCCGTTGCGGTCTCCAATTGACGAGTCTGCTGATAT
TCTGGCCTCCTTCAATGTCGACGCGGAAGGGGAAGATGAGTTTTTCTTCG
GATTGGCTACGGCACCAGCACATGTTGAGGACAGACTTAATGATGCTTGG
CTTCAGTTTGCAGAAGACGAGCCAAGAAAGAAGTCATATAAGGAGGTTTT
GGAACCTGCAGATGCATTAATGGGTGCAGCTGCTGGTGATGTTGGGTCTC
AGCAAGCTCCATTACCGAGTAATGAAGTTAATAAGACGAAGAAGAAAAGG
AAGCCTGTTAAGTTAAGCATAGAAGCTATGATTAGGGGATTTCAAAAGTA
CATAGAAGTAGATGAAGGAGAAGAAGTATCGGGAGAAAATGAAGTACCAA
CAGAAAATGAAGAAGTCCATCACAAAGTAACTGCATGGCACAATGTTCCT
CACCCGGAAGAAAGGCTACGATTTTGGTCTGATCCTGATATAGAACTGAA
GCTGGCAAAAGACACTGGTGTCAGTGTCTTTCGGCTGGGAATTGATTGGT
CAAGGATCATGCCTGCGGAGCCAGTCAATGGTCTTAAAGAAACTGTTAAT
TTTGCAGCACTGGAGCGATATAAGTGGATCATCAATAGGGTTCGCTCCTA
TGGAATGAAAGTGATGCTGACCCTGTTCCTTCCCTCATTGCCAGCATGGG
CTGGTGAGTATGGCGGTTGGGACCTGGAAAAAACATTGACAATTTCATGG
ATTTTACCAGGCTTGTTGTCCAACGGTGAACCAAATATCCTAAAATTATG
GGGGTAAATTTAATGGACCCCCTGGTCTTTTGTATGCCTCCCTTTAACTG
TGGGGGGGAACTGGGCCCGGGGGGGTAATCCTGAAAATTGCTGGAAATTT
GCCCCCTTCTGCCCTTTACCCTACTGGGTGTTTTTTCATCCCAGCCCCTT
GGGTTTGGGGAAGGGCCCCTTTGCCCCCCCCTTCAAAGGGGCCTTTATAA
ATTATTATTTTTCGGGGCAAAAAAAACCCCCCCCCCTATCCAACCAAAAA
AATGCTCCAAAAGGGGTGGTGGGGTGGGGATAAACCCCAC
back to top