DY271126

Overview
NameDY271126
Unique NameDY271126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1212
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.067e-16
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  389 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG*FSF 775
            F+ V  +L +L   L+ +V A  P L +AAE+ F+ G  GKR RP ++LL++ A                L  EL  R + +AEITEMIH ASL+HDDV+D+AD RR + ++N +  N++ V+ G F F
Sbjct:    8 FAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRAT--------------LLDQELTARHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRVAVLAGDFLF 120          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: DPS1_MOUSE (Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.012e-15
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  302 PALHGIRHQIHHQSSSVIE--DTDSQEQL-DPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG 763
            P +H I  Q H ++ ++     T S E+  DPF L   +L  L + +R  +     +L   +EY+F    +GK FRP +++LMA A N+      H+      A E++  Q+ IA + EMIH A+L+HDDV+DDA +RRG  ++N + G K  V+ G
Sbjct:   59 PTMHSIS-QFHQRTPAMCSCRQTQSGEKYSDPFKLGWRDLKGLYEDIRKELHISTRELKDMSEYYFDG--KGKAFRPIIVVLMARACNIH-----HNN-----AREMQASQRSIALVAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAG 202          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.854e-15
Identity = 48/126 (38.10%), Postives = 78/126 (61.90%), Query Frame = 2
Query:  398 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG*FSF 775
            V +EL +L K L+ +V +  P L++A+E+ F     GKR RP ++LL++ A            +E+ + T   +R + +AEITE+IH ASL+HDD+LD++D RRGI +++   G K+ ++ G F F
Sbjct:   11 VENELDLLTKNLKKLVGSGHPILSAASEHLFS--ASGKRPRPAIVLLISKAT-----------MENEIIT---SRHRRLAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAILAGDFLF 120          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: DPS1_HUMAN (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.985e-15
Identity = 49/143 (34.27%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  335 HQSSSVIEDTDSQEQLDPFSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG 763
            H ++   +    ++  DPF L   +L  L + +R  ++    +L   +EY+F    +GK FRP ++ LMA A N+      H          ++  Q+ IA I EMIH ASL+HDDV+DDA +RRG  ++N + G K  V+ G
Sbjct:   78 HHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDG--KGKAFRPIIVALMARACNIHHNNSRH----------VQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAG 208          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: PREA_CYACA (Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.104e-13
Identity = 45/126 (35.71%), Postives = 74/126 (58.73%), Query Frame = 2
Query:  398 VADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG*FSF 775
            V ++L  + + L  ++    P L++AA++   + VE K+ RP ++LL+A A++                 +++T QQ +AE+TE+IH A+LLHDDV+D++  RRG  S+N   GNK+ V  G F F
Sbjct:   11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHL--LIVESKKIRPAIVLLVAKAIDKN--------------KKIKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKIAVFAGDFLF 120          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: PREA_PORYE (Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.442e-13
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  389 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG*FSF 775
            F  V  EL  L K L+++     P L +AA++ F  G  GKR RP ++ L+A A + +               ++ T Q+ +AEITE+IH ASL+HDD++D+  TRRG+ +++ +   K+ V+ G F F
Sbjct:    8 FYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAG--GKRVRPALVFLVAKATSEK--------------QDINTGQKRLAEITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKIAVLAGDFLF 120          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.221e-12
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  389 FSLVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG*FSF 775
            F  +  EL  +   L+S+     P L +AA++ F+ G  GKR RP ++LL+A + + +               E++  Q+ +AEITE+IH ASL+HDDV+D+  TRRG  +++ +   K+ V+ G F F
Sbjct:    8 FHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSEQ--------------QEIKPGQRRLAEITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKIAVLAGDFLF 120          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: DPS1_DICDI (Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.552e-12
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  458 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG 763
            P L+S + Y+F++  +GKR RPT++LL++ AL+  V                   Q  +AEI EMIH ASL+HDDV+D+A TRR + S+N    NKL ++ G
Sbjct:  168 PILSSISSYYFEL--KGKRIRPTIVLLLSKALSSTV----------------HGSQLKLAEIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILCG 251          
BLAST of DY271126 vs. ExPASy Swiss-Prot
Match: DPS1_SCHPO (Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces pombe GN=dps1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.007e-11
Identity = 45/134 (33.58%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  395 LVADELSILAKRLRSMVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLM--ATALNVRVPEPL-------HDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLPVITG*F 769
            L+ +EL  ++  +R M+ +    L   ++Y+     +GK+ RP+++LLM  AT+L   +   +        D +      ++   Q  +A+ITEMIH+ASLLHDDV+D A+ RRG  S N   GN+  ++ G F
Sbjct:   36 LIKNELEQISPGIRQMLNSNSEFLEECSKYYTI--AQGKQMRPSLVLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNF 167          
The following BLAST results are available for this feature:
BLAST of DY271126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PREA_SYNY31.067e-1640.31Prenyl transferase OS=Synechocystis sp. (strain PC... [more]
DPS1_MOUSE2.012e-1535.67Decaprenyl-diphosphate synthase subunit 1 OS=Mus m... [more]
PREA_CYAPA5.854e-1538.10Prenyl transferase OS=Cyanophora paradoxa GN=preA ... [more]
DPS1_HUMAN9.985e-1534.27Decaprenyl-diphosphate synthase subunit 1 OS=Homo ... [more]
PREA_CYACA1.104e-1335.71Prenyl transferase OS=Cyanidium caldarium GN=preA ... [more]
PREA_PORYE1.442e-1335.66Prenyl transferase OS=Porphyra yezoensis GN=preA P... [more]
PREA_PORPU1.221e-1234.88Prenyl transferase OS=Porphyra purpurea GN=preA PE... [more]
DPS1_DICDI3.552e-1241.18Decaprenyl-diphosphate synthase OS=Dictyostelium d... [more]
DPS1_SCHPO3.007e-1133.58Decaprenyl-diphosphate synthase subunit 1 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YO20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271126 ID=DY271126; Name=DY271126; organism=Citrus clementina; type=EST; length=1212bp
CTCCCCCGCAGTCGGTTGCTGTTATCCCCTTTTGTGCTTTGACTTTCTCA
TTGACCGACCCAACACCATCTCTCAAATCTTAAATCTCCTCCGCCGTTAT
TTTTATTAATTAACTGAATAAAGGATGTTAATTTATCGTGGACTTTCTCG
GATTTCTAGAATCTCGAAAAAGACTTCGTTTGGCCGCCGTTGGCTTCCCT
CTCACCCGCTTCTCTCCGGTGCTTCACACTCTGCTGCTGCTGCTGCGGCG
GACTCTTCTGTGAAGGTTTTGGGTTGCAGAGAAGCTTATTCATGGAGTTT
GCCTGCCTTGCATGGAATTAGACATCAAATTCATCACCAGAGCAGCTCCG
TAATTGAGGATACTGATTCCCAGGAGCAGCTCGACCCATTTTCTCTTGTT
GCTGATGAACTGTCAATACTTGCTAAAAGGTTGCGCTCCATGGTAGTTGC
TGAGGTGCCTAAGCTTGCCTCAGCTGCTGAGTATTTCTTTAAAATGGGGG
TGGAAGGAAAGAGGTTCCGTCCCACGGTTTTATTGCTGATGGCAACAGCT
CTGAATGTGCGAGTACCTGAACCTCTACATGATGGAGTAGAAGATGCTTT
GGCGACTGAACTACGTACAAGGCAACAATGTATAGCTGAAATTACAGAGA
TGATCCATGTAGCAAGCCTTCTTCATGATGATGTCTTGGATGATGCAGAT
ACCAGGCGTGGTATTGGTTCATTGAATTTTGTAATGGGCAATAAGTTACC
TGTAATAACCGGGTGATTTTCTTTTTTTCCCGTGCCTGTGTTGCCCTTGC
CTCTTTTAAAAAACACAGAGGTTGGTGACGTTACTGGCAACCGTTGGAAA
ACCATCTTGTTACCTGGTGGAAACCATGGAAATTGACAACCTCATCTGGA
CCAACTTTTTAAGCTTGGGATTTTTATATGGAAAAAAAATAAATAACAAA
AACCCATTTCTTTAATCTCCAAACAGCCTGCCAAAGGAAATTGGCCCTTT
TTTTGCTTGGAAAAAAAACACCCAAAAAATTGGCCAAAAATTACCTTTTT
TTTATTTAAGAAAAAAAAAATTCGGGGGCTTTGGGAAAATTCAAATTTAA
ACACACAAAAAATTTTTTTCCTCGATTTTTCCCACGGGGACCACACCACG
CCCCCTCCCCTTGGAGAAAAAAGGGGCGTCTATTTTTAACTATTATACAA
ACAACTAACCCG
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