DY271148

Overview
NameDY271148
Unique NameDY271148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.512e-35
Identity = 71/84 (84.52%), Postives = 75/84 (89.29%), Query Frame = -2
Query:  198 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLPGDH 449
            LGYKTV    R+ KGKLII++NN PPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV CLSIID GD DIIKS+PGDH
Sbjct:   29 LGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.022e-34
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = -2
Query:  201 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLPGD 449
            LGYKTV    R+ KGKLII++NN PPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+DPGD DIIK+LPGD
Sbjct:   29 LGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.717e-34
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = -2
Query:  213 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKS 449
            LGYKTV    R  K KL+I+SNN PPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGD DIIK+
Sbjct:   29 LGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107          

HSP 2 Score: 36.5798 bits (83), Expect = 1.717e-34
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = -1
Query:  445 MVLSKKTKRILEGFNNRLVFVMKSGKFIFG 534
            MV +KKTK+  +  NN+L  VMKSGK+  G
Sbjct:    1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLG 30          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.927e-33
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = -2
Query:  201 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLPGD 449
            LGYK+V    R  KGKLI++S N PPLR+SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV CLSI+DPGD DIIKS+PGD
Sbjct:   29 LGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.287e-33
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = -2
Query:  201 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLPGD 449
            LGYK+V    R+ KGKLI++S+N PPLR+SEIEYYAMLAKVGVHHYN NNVDLGTACGKYFRV CLSI+DPGD DIIKSLPGD
Sbjct:   29 LGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.324e-33
Identity = 66/83 (79.52%), Postives = 74/83 (89.16%), Query Frame = -2
Query:  201 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLPGD 449
            LGYK+V    R+ KGKLI++S+N PPLR+SEIEYYAMLAKVGVH YNGNNVDLGTACGKYFRV CLSI+DPGD DIIK+LPGD
Sbjct:   29 LGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_ICTPU (60S ribosomal protein L30 OS=Ictalurus punctatus GN=rpl30 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.420e-32
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = -2
Query:  207 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLP 449
            LGYK      R  K KL+IL+NN P LRKSEIEYYAML+K GVHHY+GNN++LGTACGKY+RV  L+IIDPGD DII+S+P
Sbjct:   29 LGYKQSQKMIRQGKAKLVILANNCPALRKSEIEYYAMLSKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          

HSP 2 Score: 40.4318 bits (93), Expect = 4.420e-32
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = -1
Query:  445 MVLSKKTKRILEGFNNRLVFVMKSGKFIFG 534
            MV +KKTK+ LE  N+RL  VMKSGK++ G
Sbjct:    1 MVAAKKTKKSLESINSRLQLVMKSGKYVLG 30          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.077e-31
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  201 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLPGD 449
            LGYKTV    R  K KL+I++NN PPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGD DIIK+ PG+
Sbjct:   29 LGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.094e-28
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = -2
Query:  213 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKS 449
            LGYKTV    R+  GKLIIL+NN PPLRKSEIE YAMLAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPGD DII +
Sbjct:   29 LGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 107          
BLAST of DY271148 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = -2
Query:  207 LGYKTVF*FFRTFKGKLIILSNNRPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVFCLSIIDPGDFDIIKSLP 449
            LGYK      R  K KL+IL+NN P LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGD DII+S+P
Sbjct:   29 LGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of DY271148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL30_EUPES3.512e-3584.5260S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL30_LUPLU1.022e-3483.1360S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_ORYSJ1.717e-3479.7560S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL302_ARATH1.927e-3380.7260S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL301_ARATH3.287e-3380.72Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL303_ARATH7.324e-3379.5260S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_ICTPU4.420e-3269.1460S ribosomal protein L30 OS=Ictalurus punctatus G... [more]
RL30_MAIZE3.077e-3177.1160S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_WHEAT7.094e-2874.6860S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_RAT2.696e-2770.3760S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271148 ID=DY271148; Name=DY271148; organism=Citrus clementina; type=EST; length=591bp
AAAACATGAGCAAAGGTGAATTGATCCAAATTTTAAAATTGAAAACATAC
AAAATATCCAGCATGACATTCAAAATTGGAGTATATAAAAAACTGCATCC
CAAGGATGTTCAAAGGAAATTTTGAATTGAAAAACAGCATTCTGCAACTA
AACAACCTGATCACTAAAATGCAGGTTTTAACTCTGAATCAGGCTTAGTG
GTCTCCTGGAAGTGACTTGATGATATCAAAATCACCTGGATCAATAATGC
TCAAGCAAAACACACGGAAGTACTTTCCACATGCTGTTCCCAAATCGACA
TTGTTTCCATTATAGTGGTGTACACCAACTTTAGCAAGCATAGCATAATA
CTCAATCTCTGATTTTCTCAACGGTGGGCGATTATTTGACAAAATAATCA
ACTTTCCCTTAAAGGTCCTGAAAAATCAAAAAACAGTTTTGTAACCCAAA
AATGAATTTGCCGCTCTTCATCACAAAAACCAACCTATTGTTGAAGCCCT
CAAGAATCCTCTTTGTCTTCTTGCTTAGAACCATTTTCAATTGTTTGGTT
GCACCCAAAAAAAACTTCCCGAGCGGGGGCAAAATAAAAAA
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